PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g12930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 360aa MW: 40974.3 Da PI: 10.4145 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 127 | 176 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 +++kGVr+++ +g+W+AeIrd + ++r +lg+f+taeeAa a+++a+ +++ CA01g12930 127 KKHKGVRQRR-WGKWAAEIRDtR---N-KTRLWLGTFDTAEEAALAYDKAAIEIR 176 589****998.**********33...2.5**********************9987 PP | |||||||
2 | AP2 | 61.5 | 1.9e-19 | 273 | 323 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++k +g+W+AeIrd k++r +lg+f+ta eAa a+++a+ +++g+ CA01g12930 273 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 323 8*****998.**********33....36*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.00E-27 | 127 | 176 | No hit | No description |
SMART | SM00380 | 1.0E-26 | 128 | 191 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-24 | 128 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 128 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-18 | 128 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.5E-14 | 128 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.62E-30 | 273 | 328 | No hit | No description |
SMART | SM00380 | 4.1E-33 | 273 | 336 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 273 | 328 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-20 | 273 | 329 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.023 | 273 | 330 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 273 | 322 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 274 | 285 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 296 | 312 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MKCMHVPSDG LFVLFFVVFH EAMASKDKLK ENEAVTKPSE IDKVEKSTNQ VGESSVVLPR 60 VVRIYMPDSD ATDSSSDEKE RPQGEKSKRH EKTCIKEIII ENGKTRVISK KMSKEKKDIK 120 LLQENVKKHK GVRQRRWGKW AAEIRDTRNK TRLWLGTFDT AEEAALAYDK AAIEIRALAS 180 KEGLQEKGVV KKTSNQVGQI SSILPRLVRI DVPDHDTTDS SSDEEEKVEE KSEGQKRTSV 240 KKIICENGKT KVISKKMSKE EKDLNLMQEN VNKYRGVRRR KWGKWAAEIR DTRKKTRLWL 300 GTFDTALEAA LAYDKAAIEI RGANAMTNIL KPPPKKFNPI KINFIVPPLK RQKADPLHL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-19 | 128 | 338 | 13 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-172 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577756.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF3-like isoform X1 | ||||
TrEMBL | A0A1U8H2P9 | 0.0 | A0A1U8H2P9_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3AHY2 | 0.0 | A0A2G3AHY2_CAPAN; ethylene-responsive transcription factor CRF3-like isoform X1 | ||||
STRING | PGSC0003DMT400058442 | 1e-173 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11140.1 | 5e-17 | cytokinin response factor 1 |