PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g12910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 106aa MW: 12029 Da PI: 10.1248 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.1 | 5.2e-09 | 21 | 69 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 +yk V+++k g+W+Ae+r+ + +++g+f ta+ Aa ++ +++ CA01g12910 21 RYKEVSQRK-PGKWLAEVRVlG-----TkDPIWIGTFNTAKVAAYPYDGTLIEMK 69 7999***99.9*********66.....349**********999988876666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.40E-16 | 20 | 76 | No hit | No description |
SuperFamily | SSF54171 | 3.27E-11 | 21 | 77 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.801 | 21 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-16 | 21 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-10 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MILIENYLER DLKLPQEKVK RYKEVSQRKP GKWLAEVRVL GTKDPIWIGT FNTAKVAAYP 60 YDGTLIEMKG ADAVTNILKT PPRYTSQMKI NYMNPPSSSI DNARI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016550036.1 | 1e-38 | PREDICTED: ethylene-responsive transcription factor CRF5-like | ||||
TrEMBL | A0A2G3AI51 | 4e-71 | A0A2G3AI51_CAPAN; Uncharacterized protein | ||||
STRING | XP_009783397.1 | 7e-24 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 1e-13 | cytokinin response factor 2 |