PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g12870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 70aa MW: 8048.14 Da PI: 9.8867 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 2 | 50 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ++y+GVr++k +grWvAeIrd ++ ++r++lg+f+taeeA a ++ + ++ CA01g12870 2 KKYRGVRQRK-WGRWVAEIRDKRN---NTRHWLGTFDTAEEAVVASDEEAIEI 50 69*******9.**********533...4**************99999988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.85E-24 | 2 | 58 | No hit | No description |
Pfam | PF00847 | 5.7E-13 | 3 | 45 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-26 | 3 | 59 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 3 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 3 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-19 | 3 | 59 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-10 | 4 | 15 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 26 | 42 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 70 aa Download sequence Send to blast |
MKKYRGVRQR KWGRWVAEIR DKRNNTRHWL GTFDTAEEAV VASDEEAIEI TDANALTNIL 60 EPPLKKINP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 2 | 65 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-15 | 2 | 65 | 4 | 65 | ATERF1 |
3gcc_A | 2e-15 | 2 | 65 | 4 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577801.1 | 7e-45 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
Swissprot | Q9M374 | 1e-19 | CRF6_ARATH; Ethylene-responsive transcription factor CRF6 | ||||
TrEMBL | A0A1U8H2U5 | 2e-43 | A0A1U8H2U5_CAPAN; ethylene-responsive transcription factor CRF1-like | ||||
STRING | Solyc01g008890.2.1 | 6e-25 | (Solanum lycopersicum) | ||||
STRING | Solyc01g014720.1.1 | 3e-25 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400058442 | 9e-25 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-14 | related to AP2 4 |