PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g12410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 15597.9 Da PI: 10.0753 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.3e-21 | 67 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +grW+AeI+d ++n ++r++lg+f+taeeAa a+++a+ +++g CA01g12410 67 KKYRGVRQRK-WGRWAAEIQD-KIN--NTRHWLGTFDTAEEAAVAYDEAAIEING 117 59*******9.**********.345..4***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.2E-36 | 1 | 127 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 6.68E-30 | 67 | 123 | No hit | No description |
SMART | SM00380 | 1.8E-32 | 68 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.008 | 68 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-21 | 68 | 124 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-28 | 68 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-15 | 68 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 135 aa Download sequence Send to blast |
MPRVVRIYMT DNDATDSSSD EEEMLQGEKS QRPKKLWIKE IMIENERTRV ISKKKSKEKK 60 LLQVNMKKYR GVRQRKWGRW AAEIQDKINN TRHWLGTFDT AEEAAVAYDE AAIEINGANA 120 LTNILEPPPK KINP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 67 | 133 | 4 | 67 | ATERF1 |
3gcc_A | 2e-18 | 67 | 133 | 4 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555416.1 | 6e-95 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Swissprot | Q9SUE3 | 5e-33 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A1U8F9P9 | 1e-93 | A0A1U8F9P9_CAPAN; ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A2G3AI16 | 3e-92 | A0A2G3AI16_CAPAN; Uncharacterized protein | ||||
STRING | Solyc01g014720.1.1 | 6e-52 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-23 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|