PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g09650

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 312aa MW: 35162.6 Da PI: 8.781

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g09650	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.5	8.9e-56	11	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+deel+++yL +k++++++ ++++i +vd++k+ePwdLp k+k +ekewyfFs +d+ky+tg r+nrat+sgyWk+tgkdke++s ++el CA01g09650 11 LPPGFRFHPSDEELITYYLVNKISDSTNFTARAIGDVDLNKSEPWDLPGKAKMGEKEWYFFSLKDRKYPTGVRTNRATNSGYWKTTGKDKEIFS-NSEL 108 79**********************9777799***********99999*************************************.99 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grap+gekt+Wvmheyr+ CA01g09650 109 VGMKKTLVFYRGRAPRGEKTNWVMHEYRI 137 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-64	6	159	IPR003441	NAC domain
PROSITE profile	PS51005	61.493	11	159	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEGEGKEEID LPPGFRFHPS DEELITYYLV NKISDSTNFT ARAIGDVDLN KSEPWDLPGK 60 AKMGEKEWYF FSLKDRKYPT GVRTNRATNS GYWKTTGKDK EIFSNSELVG MKKTLVFYRG 120 RAPRGEKTNW VMHEYRIHSK SSYRTHKQDE WVVCRVFQKS GTAGGKKYPS SNNSSRIHMN 180 PYTTLDHINP NTICMSTQMM MPQAEHNAFQ LAMGRSSSSA YNMINHPEIQ ELHRVFRGVS 240 SSSNMMSLQP ILQSQMNYNL GGSSSGGGGD NCFTISGLNL NLGGXXXXXX XCQHFSASAT 300 SYEPTTRYDD N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-56	8	163	17	172	NAC domain-containing protein 19
3swm_B	1e-56	8	163	17	172	NAC domain-containing protein 19
3swm_C	1e-56	8	163	17	172	NAC domain-containing protein 19
3swm_D	1e-56	8	163	17	172	NAC domain-containing protein 19
3swp_A	1e-56	8	163	17	172	NAC domain-containing protein 19
3swp_B	1e-56	8	163	17	172	NAC domain-containing protein 19
3swp_C	1e-56	8	163	17	172	NAC domain-containing protein 19
3swp_D	1e-56	8	163	17	172	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	2e-99	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574174.1	0.0	PREDICTED: NAC domain-containing protein 79 isoform X1
Swissprot	Q9FLJ2	6e-82	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8H186	0.0	A0A1U8H186_CAPAN; NAC domain-containing protein 79 isoform X1
STRING	PGSC0003DMT400076103	1e-168	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	2e-98	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]