PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g08210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 31493.3 Da PI: 7.0777 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.8e-33 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl CA01g08210 23 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.455 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-32 | 20 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-16 | 23 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 23 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-9 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-20 | 123 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDRMYNGGGD GYENGVVMTR DPKPRLRWTA DLHDRFVDAV TKLGGPDKAT PKSVLRLMGL 60 KGLTLYHLKS HLQKYRLGQQ AKKQNAAEQN RENIAESFGQ FSLHSSGPSI TSSSMNGMQG 120 EAPISEQLRC QFEVQKRLQK QLEVQQKLQM RIEAQGKYLQ AILDKAQKSL SIDMTSPRAV 180 DETKAQLTDF NTALSNLMDY MHGVNRDETA AGKRTQDDSN DDQQTSTYLM KEEQNNNMNI 240 KVEETSVSFD LNSRSSYDFI VMNSDSLEAK PFPNGRLEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY303170 | 1e-127 | AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571647.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X2 | ||||
Swissprot | C0SVS4 | 5e-83 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A1U8GK55 | 0.0 | A0A1U8GK55_CAPAN; myb family transcription factor APL isoform X2 | ||||
STRING | Solyc08g076010.2.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 6e-60 | G2-like family protein |
Publications ? help Back to Top | |||
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