PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g07370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 300aa    MW: 34100.7 Da    PI: 4.8501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g07370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+lv+++++ G g+W +++++ g++R++k+c++rw +yl
       CA01g07370 15 KGPWTSEEDEKLVEYIQENGHGNWQLVPKRAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding50.26.1e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
       CA01g07370  68 RGAFSNEEEETIINLHSLLGNK-WSRIAARLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.161066IPR017930Myb domain
SuperFamilySSF466898.44E-3112109IPR009057Homeodomain-like
SMARTSM007173.4E-161464IPR001005SANT/Myb domain
PfamPF002497.2E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241669IPR009057Homeodomain-like
CDDcd001673.60E-121762No hitNo description
SMARTSM007176.5E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129421.21867117IPR017930Myb domain
PfamPF002499.4E-1568113IPR001005SANT/Myb domain
CDDcd001672.67E-1070113No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRYPCCKLE NDLKKGPWTS EEDEKLVEYI QENGHGNWQL VPKRAGLNRC GKSCRLRWTN  60
YLRPDIKRGA FSNEEEETII NLHSLLGNKW SRIAARLPGR TDNEIKNLWN THLKKKLLKS  120
GIDPVTHQPI TDPNLLLSLS NLMNPFESAL RLQAEFTEIA KIQLIQNIIQ VLNTPLAPLI  180
PSLQENYPMQ QLYNNILAPF DQILANEPSP ISKNLSDNMV VNSGILENNM INNGYSKVCE  240
VDNSEYSSLP SLVTITPENS VPFDQKIDII NPSYDDFEAL EKSLDDDFWK DISSTMQFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-132HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554147.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z29e-73MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2G3AFJ50.0A0A2G3AFJ5_CAPAN; Transcription factor MYB39
STRINGSolyc08g076700.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-77myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]