PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g05700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25490.4 Da PI: 6.5101 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.3e-19 | 50 | 100 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g+ CA01g05700 50 LYHGVRRRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 100 69****887.**********843...6**********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-13 | 49 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.34E-31 | 49 | 109 | No hit | No description |
PROSITE profile | PS51032 | 22.339 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-35 | 50 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 50 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-21 | 50 | 108 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-9 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEQHQSPTTF NNNKQTSSSS LTKRPITLTS SKQETNHKKN KKIDGSKHPL YHGVRRRSWG 60 KWVSEIREPR KKSRIWLGTF ATPEMAARAH DVAAIAIKGH VALLNFPELA QQFPKPASKC 120 AKDVQTAAAK AAALDISPRN SMEVPCSPYG ETESTESSLG SSNDDPFLDL PDLLMDLTQK 180 FDEVCHYNSS WDLAGAGSGS NDSCEFWPEE DLYLLDYSHE TALEVPQLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-19 | 45 | 107 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 2e-93 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553396.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 2e-45 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2G3AEX5 | 1e-171 | A0A2G3AEX5_CAPAN; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400012314 | 1e-103 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 9e-36 | ERF family protein |
Publications ? help Back to Top | |||
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