PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g05680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 25185.4 Da PI: 5.8649 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 54 | 104 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g+ CA01g05680 54 LYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 104 69****888.**********843...6**********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.4E-13 | 53 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-31 | 53 | 113 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 54 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-35 | 54 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 54 | 112 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.115 | 54 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEQEHQSPIS LNNLNNNKTT SSSALTKRPI TLISSKEETN HKKSKKLDDT KHPLYHGVRK 60 RSWGKWVSEI REPRKKSRIW LGTFATPEMA ARAHDVAAIA IKGHLAMLNF PELAHQFPKP 120 ASKCAKDIQS AAAKAAALDI SPRNCMEQES KGELMEVVPC SPDEERETNE DPFLDLPDLL 180 MDLTQEFDEF CYSNYFEFWP EEDLYLWDYS HGTVLEVPRP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 50 | 111 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-102 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553404.1 | 1e-165 | PREDICTED: ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A2G3AF14 | 1e-164 | A0A2G3AF14_CAPAN; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400012314 | 9e-97 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 9e-35 | ERF family protein |