PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g05420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 407aa MW: 45593 Da PI: 6.9397 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00061 | 17 | 38 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C++ F++ L H+r+H CA01g05420 17 YCRVCKRGFNSAGALGGHMRSH 38 5********************9 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 158 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H CA01g05420 158 FQCKACKKVFNSHQALGGHRASH 180 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.182 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.7E-5 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.62E-7 | 157 | 180 | No hit | No description |
PROSITE profile | PS50157 | 10.014 | 158 | 185 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.7E-9 | 158 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.073 | 158 | 180 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 160 | 180 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.62E-7 | 241 | 268 | No hit | No description |
Pfam | PF13912 | 9.9E-12 | 245 | 269 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 246 | 268 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 246 | 268 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 248 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MSENNGQKSE PSSVILYCRV CKRGFNSAGA LGGHMRSHGA AGENNNRNYG EQVSEPKYTI 60 NNFRRDKSES QKHSYNLRTN SNRLVAGNNR STSDDRVDVE KSEYYYGRDG KEKQHSSREE 120 EDLANCLVML SSKSCDLSDD NNNSESRNKA KEVEKGMFQC KACKKVFNSH QALGGHRASH 180 KKVKGCYAAK LDVDDDDTTN SNNDDNDIDE DLMISTGDLI LHQESNSSQS QSPSSSSFSR 240 KRSRVHQCSI CQRVFSSGQA LGGHKRCHWL TSSIPETTFI PSFQEIQYHN QEQVLYNKPI 300 FTNHHQPLDL NFPAQLGNPA EVGLKLHSNP FEQESPKSSL QLWTDQQVDI NQNENQNHKC 360 KYSLSREEDI KSKEAKLSNL KDVNLDGGSS WLQIGIGPTP DILPTL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553474.1 | 0.0 | PREDICTED: zinc finger protein ZAT2-like | ||||
TrEMBL | A0A2G3AES4 | 0.0 | A0A2G3AES4_CAPAN; Uncharacterized protein | ||||
STRING | Solyc06g005180.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1910 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 5e-24 | C2H2-like zinc finger protein |