PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g04770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | YABBY | ||||||||
Protein Properties | Length: 218aa MW: 24247.3 Da PI: 7.6678 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 217.3 | 4.8e-67 | 17 | 180 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhC++ll l +++ +h+++s+ + ++ l+ ++++ +++ ++ ++ + CA01g04770 17 PSEQLCYVHCNNCDTVLAVSVPCTSLFKTVTVRCGHCANLLPGWLLPSTNHHHQLHHFGHSYFSPSHNLLEEISNATPNFLMNQGNSAHDFVLP--ARP 113 68****************************************9999999999999999999887755555444444444444444433333332..356 PP YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl CA01g04770 114 GFDDLPRPPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 180 6789999999789****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-64 | 17 | 180 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 121 | 174 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.5E-5 | 128 | 174 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSSSNSLSLD HLPPPPPSEQ LCYVHCNNCD TVLAVSVPCT SLFKTVTVRC GHCANLLPGW 60 LLPSTNHHHQ LHHFGHSYFS PSHNLLEEIS NATPNFLMNQ GNSAHDFVLP ARPGFDDLPR 120 PPPVINRPPE KRQRVPSAYN RFIKEEIQRI KAGNPDISHR EAFSAAAKNW AHFPHIQFGL 180 MTDQTVKRTN VRQQDGEDVL MKDGLFSTSA NVSVSPY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667760 | 0.0 | KJ667760.1 Solanum sisymbriifolium YAB1 protein mRNA, complete cds. | |||
GenBank | KJ667761 | 0.0 | KJ667761.1 Solanum aethiopicum YAB1 protein mRNA, complete cds. | |||
GenBank | KJ667763 | 0.0 | KJ667763.1 Solanum mammosum YAB1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016568967.1 | 1e-162 | PREDICTED: protein YABBY 4-like | ||||
Swissprot | A2X7Q3 | 5e-77 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 5e-77 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A1U8GCB5 | 1e-161 | A0A1U8GCB5_CAPAN; Protein YABBY 4 | ||||
TrEMBL | A0A2G3AEN1 | 1e-161 | A0A2G3AEN1_CAPAN; protein YABBY 4-like | ||||
STRING | PGSC0003DMT400012083 | 1e-142 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 1e-66 | YABBY family protein |
Publications ? help Back to Top | |||
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