PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g04740

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 337aa MW: 38859.4 Da PI: 7.3385

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g04740	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.3	1.4e-53	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL+kk+++k+++l +vike+d+yk+ePwdL++ ++ +e+ ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk++++ k CA01g04740 7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKEIDLYKIEPWDLQElcRIGSEDPsEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYR-K 103 69**************************.9***********954455554446**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 + l+g++ktLvfykgrap+g+k+d +mheyrle CA01g04740 104 HCLIGMRKTLVFYKGRAPNGQKSDYIMHEYRLE 136 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-58	5	155	IPR003441	NAC domain
PROSITE profile	PS51005	56.668	7	155	IPR003441	NAC domain
Pfam	PF02365	9.3E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNSFTHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK EIDLYKIEPW DLQELCRIGS 60 EDPSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YRKHCLIGMR KTLVFYKGRA 120 PNGQKSDYIM HEYRLETNEN GTQAKGWAVC RVFKKKLATS IRGEGEQYQQ ESLCWYNNEQ 180 LVSNFIPDFD SPRRNNFPNI PYNTTPSYHH QLPYTNMQPH NNDALFLQLP QLESPKIPQS 240 YHGINQINIE QPNSIYNNYD NQAVDQVTDW RVLDKFVASQ LSQQDGSAAA CSSSPASHEQ 300 QMNLLQDDSI NKGTEMASSE IASLSASSSQ LDHLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-49	6	156	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-111	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553146.1	0.0	PREDICTED: NAC domain-containing protein 26
Swissprot	F4HYV5	1e-122	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	A0A2G3AEP2	0.0	A0A2G3AEP2_CAPAN; NAC domain-containing protein 7
STRING	XP_009631955.1	1e-175	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	1e-120	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]