PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g03980
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 257aa    MW: 29428.6 Da    PI: 5.4833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g03980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-135195554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                + + Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L
  CA01g03980 51 NIMSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQDL 95
                5678*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5334695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-1746110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.85E-1449100No hitNo description
PfamPF000103.2E-115195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1652110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENISEDYNN YWETAMFLPS EEFDSCFDEA ISSYYDSSSP EGAHSSMASK NIMSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAIE YIQDLHEQER RIRAEISVLE SGRSKKNSDV  120
EFDQDGSFDL KPKRSKRLEQ QYDYDSSEST TKSSPSSSPI DVLELRVSSM GEKTMVVSLT  180
CSKRRDTMIK VCEVFESLNI KIISANITAF SGRLLKIAFI EVTKSLLFFF VTVYFVLFFF  240
VLLPLVFHCV SLSMMF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-62HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568388.11e-161PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV94e-72BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2G3AEA10.0A0A2G3AEA1_CAPAN; Transcription factor bHLH35
STRINGXP_009603227.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.23e-74bHLH family protein