PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g03560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 345aa    MW: 37411.8 Da    PI: 6.5132
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g03560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP943e-296315615105
         TCP  15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssas....nsssgkaaksaakskksqk 102
                 v+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++               +     n++++  +++++  k+++k
  CA01g03560  63 VEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsvngalkI------PTTapvkNDNEEIDENDTH--KRRRK 153
                 79*************************************************8888844432222221......1111111112221111111..11111 PP

         TCP 103 saa 105
                 s++
  CA01g03560 154 STN 156
                 111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136919.60749110IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-2364148IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSNYHDPDDD CGNSELSNCT AVEQKDRKMD NNEIYNGKQV VLSSLKEEPF DTHQLAPAMP  60
ITVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL EHAEEAIIEA TGTGTVPAIA  120
VSVNGALKIP TTAPVKNDNE EIDENDTHKR RRKSTNSEFV NAANVSQFAP ATTADTAING  180
PPHGHGLVPV WAMSNGGIMV PSNAIWMVPA ISHTNNNNSN NNSILQYPQL WAITPSVTPV  240
FNLATRPILP FVAVSATNIN GSPPVMMAGP LTTTGPKVGS NKSSMAPASL SSSSSIDRNN  300
NNNNDVKPHM LRDFSLEIYD RKELQFKNRS ESHQQEAQVT SSKP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755202e-60HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567883.10.0PREDICTED: transcription factor TCP19-like
TrEMBLA0A2G3AE600.0A0A2G3AE60_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000585341e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137311112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.29e-43TCP family protein