PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g03560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 345aa MW: 37411.8 Da PI: 6.5132 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94 | 3e-29 | 63 | 156 | 15 | 105 |
TCP 15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssas....nsssgkaaksaakskksqk 102 v+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + n++++ +++++ k+++k CA01g03560 63 VEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsvngalkI------PTTapvkNDNEEIDENDTH--KRRRK 153 79*************************************************8888844432222221......1111111112221111111..11111 PP TCP 103 saa 105 s++ CA01g03560 154 STN 156 111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 19.607 | 49 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-23 | 64 | 148 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MSNYHDPDDD CGNSELSNCT AVEQKDRKMD NNEIYNGKQV VLSSLKEEPF DTHQLAPAMP 60 ITVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL EHAEEAIIEA TGTGTVPAIA 120 VSVNGALKIP TTAPVKNDNE EIDENDTHKR RRKSTNSEFV NAANVSQFAP ATTADTAING 180 PPHGHGLVPV WAMSNGGIMV PSNAIWMVPA ISHTNNNNSN NNSILQYPQL WAITPSVTPV 240 FNLATRPILP FVAVSATNIN GSPPVMMAGP LTTTGPKVGS NKSSMAPASL SSSSSIDRNN 300 NNNNDVKPHM LRDFSLEIYD RKELQFKNRS ESHQQEAQVT SSKP* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 2e-60 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567883.1 | 0.0 | PREDICTED: transcription factor TCP19-like | ||||
TrEMBL | A0A2G3AE60 | 0.0 | A0A2G3AE60_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058534 | 1e-147 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13731 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 9e-43 | TCP family protein |