PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g03410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26193.6 Da PI: 4.8963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 78 | 125 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+ +l+g CA01g03410 78 FRGIR-CR-SGKWVSEIREPRK---TRRIWLGTYPTPEMAAAAYDVAAMALKG 125 89**9.55.6*********843...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-25 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-26 | 77 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.599 | 77 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-17 | 78 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.13E-16 | 78 | 135 | No hit | No description |
Pfam | PF00847 | 1.0E-9 | 78 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MADSSQNPTK YSSQLNQHPA SSEITKIPFR LIPQPLPPPP PPPPVPPQPQ IQTTHNLVET 60 ISSSPSPSSN IGGKHAVFRG IRCRSGKWVS EIREPRKTRR IWLGTYPTPE MAAAAYDVAA 120 MALKGSDAII NFPNNINLYP SLPPSPSAAD IRKXXXXXXX TGEATSGTTQ PGTDDQSSEN 180 MHMNIETKDH EYIDEEALFD MPNLLVDMAE AMMVSPPRMD SPRSDDSPGN SDAESLWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-16 | 68 | 138 | 5 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 2e-56 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567672.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9CAN9 | 1e-45 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | A0A2G3AE74 | 1e-167 | A0A2G3AE74_CAPAN; Ethylene-responsive transcription factor | ||||
STRING | Solyc08g080290.2.1 | 3e-81 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400058587 | 4e-81 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 3e-43 | ERF family protein |