PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g03260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 679aa    MW: 75185.7 Da    PI: 6.2779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g03260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.33.9e-1292966621373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cAea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsPi+kf h+t N
  CA01g03260 296 LISLLVSCAEAIGSRNVTGVNQLIARLGQLASPRGSPISRLTAYFTEALALRVARLWPHIFHIVPPRDLD-RLDDDSSSALRLLNQVSPIPKFIHFTSN 393
                 5799****************************************************************98.56788899******************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 + +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef++ v++rled++l++L+vk+
  CA01g03260 394 EILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEFHP-VVDRLEDVRLWMLHVKE 487
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE++aVn+vlq+hrll ++       +++L l++s++P+++ ++eqea hn++s+ +r++++l+yy+a+fds+  +lp +s +rik+E+  ++rei+n+
  CA01g03260 488 GESVAVNCVLQMHRLLYDNSGGI--LRDFLGLIRSTNPTIILLAEQEAAHNEPSLDARLVNSLRYYAAVFDSIGFNLPLDSPARIKIEEL-FAREIRNI 583
                 ***************95544433..479************************************************************98.******** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                 +aceg++r+erhe ++kWr+ +e+  F+   ++e++  q ++ll++++ + yrv    +++++l+l W d+pL +vSaW
  CA01g03260 584 IACEGRDRTERHECFGKWRNLMEQGSFRCTGITERELLQSQMLLKMYSCEDYRVTkqgNDDAALTLSWLDQPLCTVSAW 662
                 ************************************************888***94445589999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.772270640IPR005202Transcription factor GRAS
PfamPF035141.4E-126296662IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQAIRPVGLS  60
VEKPIEAKNS SCSLKQNIRL PPSSTSAQTS YVEGRRESKD EFWEKGRSLK RYAEQGCLDD  120
ETCMSRAKRK KGNRKSGDCS EEGYGLSLRQ LGGGDFWLQS GYNVARSVPL IAGLHPPQAA  180
PFSFSCSGEE ESVCYVPSEV ISPPPPLSNN PWIESVVTEI TNFGDKNAST SQDLAKETSV  240
SSASLDSHGL VLRPNEIPGE HEVGNGSRQP NPNDRGEVVA AHNGHNNHRE DDAAELISLL  300
VSCAEAIGSR NVTGVNQLIA RLGQLASPRG SPISRLTAYF TEALALRVAR LWPHIFHIVP  360
PRDLDRLDDD SSSALRLLNQ VSPIPKFIHF TSNEILLRAF EGKDRVHIID FDIKQGLQWP  420
SLFQSLASRP NPPTHVRITG IGESKQDLVE TGDRLAEFAE ALNLAFEFHP VVDRLEDVRL  480
WMLHVKEGES VAVNCVLQMH RLLYDNSGGI LRDFLGLIRS TNPTIILLAE QEAAHNEPSL  540
DARLVNSLRY YAAVFDSIGF NLPLDSPARI KIEELFAREI RNIIACEGRD RTERHECFGK  600
WRNLMEQGSF RCTGITEREL LQSQMLLKMY SCEDYRVTKQ GNDDAALTLS WLDQPLCTVS  660
AWAPIDAAGS SSSYYQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-7330366425379Protein SCARECROW
5b3h_D2e-7330366425379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092790.0AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence.
GenBankAP0102630.0AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567589.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A1U8GHL70.0A0A1U8GHL7_CAPAN; Scarecrow-like protein 28
TrEMBLA0A2G3AE750.0A0A2G3AE75_CAPAN; scarecrow-like protein 28
STRINGPGSC0003DMT4000078790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein