PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g01830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 573aa MW: 65322.5 Da PI: 9.9375 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.3 | 1.4e-11 | 26 | 74 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 GVr+ k +gr++ eIrdp +r k+++lg+f+ta+eA +a+ + ++e+e CA01g01830 26 VGVRRQK-NGRYAGEIRDP----IRhKKVWLGTFDTAQEASQAYLSKKSEFENE 74 59**888.8*********7....357******************9998888875 PP | |||||||
2 | AP2 | 30 | 1.3e-09 | 92 | 139 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++ GV+ + k+g++ + Ir p ++ r++lg+f+ aeeA +a+ +++ CA01g01830 92 RVVGVHKRNKQGKYNSAIRNP----ITeERIWLGSFDNAEEASQAYQSKKLE 139 799*****************7....347*****************9776665 PP | |||||||
3 | AP2 | 26.8 | 1.3e-08 | 216 | 262 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 + G+ + k +gr++A I d + + +++ g+f+t eeA +a+ + ++e CA01g01830 216 FVGIKRQK-NGRYAAVITDrV-----KHKIWFGTFDTIEEASRAYLSKKFEFE 262 78998777.8*********55.....69*****************98888876 PP | |||||||
4 | AP2 | 24.6 | 6.3e-08 | 309 | 354 | 5 | 54 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 G+r++k +gr++A I dp +r k + lg+f+t +eA +a+ + ++e CA01g01830 309 GIRRRK-SGRYAAVITDP----IRhKEVCLGTFDTIDEASQAYKSKKSEFE 354 9**999.7*********7....357******************88776665 PP | |||||||
5 | AP2 | 22 | 4.1e-07 | 403 | 440 | 5 | 45 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 G + k+ gr+ +eI +p + k+ +lg+fgtaeeA a CA01g01830 403 GAYKSKTAGRYTSEIIHPI----TkKKTWLGTFGTAEEASHA 440 5578899**********72....36**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-6 | 24 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.236 | 24 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-6 | 26 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.56E-14 | 26 | 64 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-10 | 26 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-13 | 27 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-4 | 92 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.643 | 92 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-9 | 93 | 140 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-11 | 95 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.825 | 215 | 275 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.004 | 215 | 281 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-9 | 216 | 261 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-4 | 216 | 263 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-8 | 216 | 261 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.876 | 306 | 365 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-9 | 308 | 352 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0038 | 309 | 376 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-9 | 309 | 350 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.719 | 400 | 471 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-8 | 400 | 449 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.027 | 404 | 455 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-10 | 408 | 448 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MDTKLVVNVK QMKEPESSKA KMISLVGVRR QKNGRYAGEI RDPIRHKKVW LGTFDTAQEA 60 SQAYLSKKSE FENEKLSHQG NEKSKRIRET TRVVGVHKRN KQGKYNSAIR NPITEERIWL 120 GSFDNAEEAS QAYQSKKLEF NAMLQRCSTN KDGHSEQGNE NVNGEVFETD SCNGGTDRRI 180 DPREIGTTEE AKEGSKVFNS CLISNVRVNP KDKTTFVGIK RQKNGRYAAV ITDRVKHKIW 240 FGTFDTIEEA SRAYLSKKFE FEKLRQQGKT ENNLKKNCDQ IQHPESTSVV ETLNTATSCD 300 LKARRSLIGI RRRKSGRYAA VITDPIRHKE VCLGTFDTID EASQAYKSKK SEFEKLRQGN 360 KENKRKKNCD QIQRPQVASL DTASEYGRAK RINNHNTTPH MIGAYKSKTA GRYTSEIIHP 420 ITKKKTWLGT FGTAEEASHA FQSKKLEFQK LVKAKKQQCI QRKSEKLVNF KQGTAEETFH 480 VKQSKVFDLQ SSKEVELQSD TPTDSRARKN QEGQEDDEDL WKGKWVQLPD NTEVMFSSKL 540 GLPIIDNYGY LLGEFSTLDD LSICVTEDDN QM* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016566267.1 | 0.0 | PREDICTED: uncharacterized protein LOC107864421 | ||||
TrEMBL | A0A2G3ADK3 | 0.0 | A0A2G3ADK3_CAPAN; Ethylene-responsive transcription factor 9 | ||||
STRING | PGSC0003DMT400031744 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4341 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 3e-13 | ERF family protein |