PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 319aa    MW: 35037.8 Da    PI: 4.692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01440genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-19114164155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  CA01g01440 114 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 164
                 59********.**********72....45*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-32114174No hitNo description
PfamPF008474.1E-12115164IPR001471AP2/ERF domain
SMARTSM003801.7E-37115178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-30115172IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21115173IPR016177DNA-binding domain
PROSITE profilePS5103223.499115172IPR001471AP2/ERF domain
PRINTSPR003673.3E-10116127IPR001471AP2/ERF domain
PRINTSPR003673.3E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVKSSAPVSF PGRKRNSEMN VAGPRVVRIT VTDADATDSS SDEAEDGLYS RQRVKKFVNE  60
VRIESSETGI FRNGLFENGV LKNGSSSETA VATTVSRRRK KTTAASKLKV NNGKKFRGVR  120
QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE AAMVYDHAAI QLRGPNALTN FAVATPAKTS  180
CSGYISGEDS DQRSPKSVLR CASTSFEDSQ NNEEAEAESS IPILPSEHFK SNSDFKGEND  240
ISMSGNFGDF PPFDSIFPDF FQFEDPVPIP DLFDPVVLPD MFVGSSTLDF GFGSSSWPEE  300
DYFQDFGDVF GSDPLVSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20113171362ATERF1
3gcc_A3e-20113171362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555837.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A1U8F9390.0A0A1U8F939_CAPAN; Uncharacterized protein
TrEMBLA0A2G3ADH90.0A0A2G3ADH9_CAPAN; ethylene-responsive transcription factor CRF1-like
STRINGPGSC0003DMT4000320581e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.25e-38cytokinin response factor 2