PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g00490

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 288aa MW: 32085.5 Da PI: 8.5728

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g00490	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.6e-40	37	98	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++ ++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss CA01g00490 37 KDQVVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKSSS 98 78999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	30	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-34	38	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDTANWPQEI VVKPMEEIIG SSKPNNCVER KLVRPQKDQV VNCPRCNSTN TKFCYYNNYS 60 LSQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKKSSSSN NNNNNNNSNI NHVVINNPLM 120 KKLPDLIVPP LIQHDIEEYP ERHFGNRPDN STVLPQHHHD QNPRKIIHEG SQDLNLGFSS 180 DFKTITELIQ VANYDGGNKD NNNSTNNIST LPPPSEPSSP AFSQLPSLNF SLDHHGLGNN 240 NVRSGYGFFF PFVGLKQVSN ASDHVRDQST NNGYWNGMLG GGGGGSW*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	1e-118	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016565440.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A1U8G2S1	0.0	A0A1U8G2S1_CAPAN; Dof zinc finger protein DOF4.6
TrEMBL	A0A2G3AD47	0.0	A0A2G3AD47_CAPAN; dof zinc finger protein DOF4.6-like
STRING	PGSC0003DMT400031928	1e-122	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-46	Dof family protein