PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g93190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23443.1 Da PI: 10.6139 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.2 | 2.4e-24 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n+s+ qvtfskRr+g++KKA+EL++LC+ae+a++ifs+ gk+y + CA00g93190 15 KIQNESKLQVTFSKRRAGLFKKASELCTLCGAEIAIVIFSPGGKVYSF 62 69********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-32 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.133 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-26 | 7 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.32E-34 | 7 | 75 | No hit | No description |
PRINTS | PR00404 | 1.4E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTRRSKGRQR IDIAKIQNES KLQVTFSKRR AGLFKKASEL CTLCGAEIAI VIFSPGGKVY 60 SFGHPSVELL VDRFLGRNLP PPNNAGHQNH LLMNHRNAGL RELNKKVMDM EEIFRMEKAR 120 GESILDIRRA NGGWWEAPIN ALNLSQLQQL MEAMKFLKKD IEKEAQQLQM ATYVGLPFLT 180 FGSSLSPTYG DRASSTHGLN VGATFANRV* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554465.1 | 1e-154 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G2XTR9 | 1e-154 | A0A2G2XTR9_CAPAN; Uncharacterized protein | ||||
STRING | Solyc01g106730.1.1 | 2e-91 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-52 | AGAMOUS-like 62 |