PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g88980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 14995.5 Da PI: 7.353 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5e-12 | 68 | 108 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ CA00g88980 68 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYD 108 89****9888.8*********3.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.19E-19 | 68 | 117 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-12 | 68 | 110 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-8 | 68 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.842 | 69 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-15 | 69 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-12 | 69 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MEGTSSIDQE STTSDSLSIA PAAPSQQPSM MTTTKPPESL CRMGSGTSSM IIDGENGVEA 60 ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE NEAARAYDVX XGAATLLLIS 120 NPYLRIKKVM MMWKSLS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY727830 | 1e-169 | AY727830.1 Capsicum annuum RAV transcription factor (RAV1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548054.1 | 1e-66 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9C6M5 | 2e-42 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2G2YCD6 | 5e-95 | A0A2G2YCD6_CAPAN; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
STRING | XP_009613275.1 | 4e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19051 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 5e-41 | RAV family protein |