PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g87780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 53aa MW: 5826.91 Da PI: 11.8226 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.5 | 1.1e-15 | 20 | 52 | 1 | 33 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda 33 k+i+n+ +vtfskRr g++KKA+EL++L++a CA00g87780 20 KPIDNQNSIHVTFSKRRLGLFKKASELCILTGA 52 78****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.02E-14 | 12 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-7 | 12 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.554 | 12 | 52 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.10E-15 | 13 | 52 | No hit | No description |
PRINTS | PR00404 | 1.1E-9 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-13 | 22 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-9 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 53 aa Download sequence Send to blast |
MNVNTNVVKK TKGRRKTAIK PIDNQNSIHV TFSKRRLGLF KKASELCILT GA* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549469.1 | 1e-27 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8EZY0 | 3e-26 | A0A1U8EZY0_CAPAN; agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G2VF33 | 2e-26 | A0A2G2VF33_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G2VF35 | 1e-26 | A0A2G2VF35_CAPBA; Agamous-like MADS-box protein AGL62 | ||||
STRING | PGSC0003DMT400013105 | 2e-20 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 3e-14 | M-type_MADS family protein |