PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g86400

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 383aa MW: 43117.8 Da PI: 5.5426

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g86400	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.5	8e-51	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 l+pGfrFhPtdeelv++yL++kv gk++++ ++++e+d+yk+eP +L + ++k+++ ewyfFs+ dkky +g+r nrat +gyWkatgkd+ v + k+ CA00g86400 12 LAPGFRFHPTDEELVMYYLRRKVCGKPFRF-QAVAEIDVYKFEPGELAEhsSLKTRDLEWYFFSPVDKKYCNGSRLNRATGQGYWKATGKDRYVRH-KS 108 579***********************99.88**********84246777888*********************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLvf++grap+g++t+Wvmheyrl CA00g86400 109 QAIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 139 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-60	10	162	IPR003441	NAC domain
PROSITE profile	PS51005	56.182	12	162	IPR003441	NAC domain
Pfam	PF02365	4.2E-28	14	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MVATPTPAPT SLAPGFRFHP TDEELVMYYL RRKVCGKPFR FQAVAEIDVY KFEPGELAEH 60 SSLKTRDLEW YFFSPVDKKY CNGSRLNRAT GQGYWKATGK DRYVRHKSQA IGMKKTLVFH 120 SGRAPDGKRT NWVMHEYRLA DEELEKAGVV QDCFVLCRIF QKSALGPPTG DRYAPFIEEE 180 WDDDSAVLPG GDMVDDVVNG VEARVESNDL DQDALPKTAR HSENLTEPRG LPFVCKRERS 240 EEPELLSLSQ SKRSQHDVPS SSRANGSEDS TFTSQDPVNM MTTKDCPLAL LGFPLLEPFE 300 PKESQPCNPL TFDSSNLDKS VPPGYLKFIS NLENGILNVS MERETLKIEV MRAQAMINVL 360 QSRIDLLTKE NEDMRRLVRG GG*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MVATPTPAPT SLAPGFRFHP TDEELVMYYL RRKVCGKPFR FQAVAEIDVY KFEPGELAEH  60
SSLKTRDLEW YFFSPVDKKY CNGSRLNRAT GQGYWKATGK DRYVRHKSQA IGMKKTLVFH  120
SGRAPDGKRT NWVMHEYRLA DEELEKAGVV QDCFVLCRIF QKSALGPPTG DRYAPFIEEE  180
WDDDSAVLPG GDMVDDVVNG VEARVESNDL DQDALPKTAR HSENLTEPRG LPFVCKRERS  240
EEPELLSLSQ SKRSQHDVPS SSRANGSEDS TFTSQDPVNM MTTKDCPLAL LGFPLLEPFE  300
PKESQPCNPL TFDSSNLDKS VPPGYLKFIS NLENGILNVS MERETLKIEV MRAQAMINVL  360
QSRIDLLTKE NEDMRRLVRG GG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-52	11	164	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-52	11	164	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-52	11	164	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-52	11	164	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	7e-52	11	164	19	170	NAC domain-containing protein 19
3swm_B	7e-52	11	164	19	170	NAC domain-containing protein 19
3swm_C	7e-52	11	164	19	170	NAC domain-containing protein 19
3swm_D	7e-52	11	164	19	170	NAC domain-containing protein 19
3swp_A	7e-52	11	164	19	170	NAC domain-containing protein 19
3swp_B	7e-52	11	164	19	170	NAC domain-containing protein 19
3swp_C	7e-52	11	164	19	170	NAC domain-containing protein 19
3swp_D	7e-52	11	164	19	170	NAC domain-containing protein 19
4dul_A	6e-52	11	164	16	167	NAC domain-containing protein 19
4dul_B	6e-52	11	164	16	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269\|PubMed:19237690, ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990, ECO:0000269\|PubMed:28207953}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269\|PubMed:16553893}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016573813.1	0.0	PREDICTED: NAC domain-containing protein 78-like
Swissprot	Q9SQY0	1e-103	NAC52_ARATH; NAC domain containing protein 52
TrEMBL	A0A2G2XV64	0.0	A0A2G2XV64_CAPAN; NAC domain-containing protein 53
STRING	Solyc05g055480.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3140	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	2e-89	NAC domain containing protein 52

Publications ? help Back to Top
Higgins JD,Ferdous M,Osman K,Franklin FC The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] Elmayan T, et al. Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]