PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g85560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23703.7 Da PI: 4.6197 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.9 | 3.2e-10 | 129 | 162 | 20 | 55 |
AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +dp +ng +r++lg++ tae+Aa a+++a+ +++g CA00g85560 129 WDPAKNG--ARVWLGTYETAEDAALAYDKAAFRMRG 162 3465565..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.724 | 90 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-16 | 122 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-18 | 129 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-13 | 129 | 172 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.51E-19 | 129 | 170 | No hit | No description |
Pfam | PF00847 | 1.6E-6 | 133 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MFGNIDFEND YALLQSIKLQ LLEDWEWENP PATSSENYAS SYGRNNSMES NTNTLSNVFS 60 NEFDYTLSNV FPNEFDYTSD STFVSDFHND CIGHERQPSS VKSEPEIWNF SEYAAPPETR 120 VVVAXQSRWD PAKNGARVWL GTYETAEDAA LAYDKAAFRM RGSRALLNFP LRINSGEPEP 180 VRVGSKKSST SPECSSSSSS SSGKRRKKIP V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-25 | 130 | 177 | 23 | 70 | ATERF1 |
3gcc_A | 3e-25 | 130 | 177 | 23 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553616.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A2G3AF07 | 1e-145 | A0A2G3AF07_CAPAN; Ethylene-responsive transcription factor 1 (Fragment) | ||||
STRING | Solyc08g078170.1.1 | 2e-71 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 3e-25 | ethylene responsive element binding factor 2 |