PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g84200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 293aa    MW: 33192.6 Da    PI: 9.6646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g84200genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95.1e-33491891128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                 lp+G++F+P+d+e++ e+L++kv+ +       +   +    +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++      + +
  CA00g84200  49 LPAGVKFDPSDQEIL-EHLEAKVRLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVAKDGLVRHFFHRPSKAYTTGTRKRRKVHtdiqgnETR 142
                 799***********9.99****999884554332...122222333336**********.555556788******************744445455888 PP

         NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 W++tgk+++v+  k++++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  CA00g84200 143 WHKTGKTRPVVF-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 189
                 ************.8899**********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-3744208IPR003441NAC domain
PROSITE profilePS5100532.36249208IPR003441NAC domain
PfamPF023656.3E-1550189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTCINIETLN NVPSSNGYNT SVTKTRTCPS CGHLIKFEEK AGIHNLPGLP AGVKFDPSDQ  60
EILEHLEAKV RLDAHKLHPL IDEFIQTLEG ENGICYTHPE KLPGVAKDGL VRHFFHRPSK  120
AYTTGTRKRR KVHTDIQGNE TRWHKTGKTR PVVFKNKVKG HKKILVLYTN YGKQRKPEKT  180
NWVMHQYHLG DNEDEKEGEL VVSKVFYQTQ PRQCGGNNNN NNNNSLLKNN CPPIPQVRTN  240
IGQVGSQFVQ CFNPTTLISF EQFEHNTRPT TTMTMSPRLP NFNNLPDASF IP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-155HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580839.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1U8HJW90.0A0A1U8HJW9_CAPAN; NAC domain-containing protein 73
TrEMBLA0A2G2Z3V70.0A0A2G2Z3V7_CAPAN; NAC domain-containing protein 73-like
STRINGSolyc07g053590.2.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]