PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g84200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 33192.6 Da PI: 9.6646 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.9 | 5.1e-33 | 49 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+P+d+e++ e+L++kv+ + + + +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + + CA00g84200 49 LPAGVKFDPSDQEIL-EHLEAKVRLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVAKDGLVRHFFHRPSKAYTTGTRKRRKVHtdiqgnETR 142 799***********9.99****999884554332...122222333336**********.555556788******************744445455888 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v+ k++++g kk+Lv+y g+++k+ekt+Wvmh+y+l CA00g84200 143 WHKTGKTRPVVF-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 189 ************.8899**********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-37 | 44 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.362 | 49 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-15 | 50 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MTCINIETLN NVPSSNGYNT SVTKTRTCPS CGHLIKFEEK AGIHNLPGLP AGVKFDPSDQ 60 EILEHLEAKV RLDAHKLHPL IDEFIQTLEG ENGICYTHPE KLPGVAKDGL VRHFFHRPSK 120 AYTTGTRKRR KVHTDIQGNE TRWHKTGKTR PVVFKNKVKG HKKILVLYTN YGKQRKPEKT 180 NWVMHQYHLG DNEDEKEGEL VVSKVFYQTQ PRQCGGNNNN NNNNSLLKNN CPPIPQVRTN 240 IGQVGSQFVQ CFNPTTLISF EQFEHNTRPT TTMTMSPRLP NFNNLPDASF IP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-155 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580839.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-118 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1U8HJW9 | 0.0 | A0A1U8HJW9_CAPAN; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2G2Z3V7 | 0.0 | A0A2G2Z3V7_CAPAN; NAC domain-containing protein 73-like | ||||
STRING | Solyc07g053590.2.1 | 1e-176 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-119 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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