PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g82730

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 997aa MW: 109389 Da PI: 5.4232

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g82730	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	593	644	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ CA00g82730 593 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 644 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.132	576	664	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-26	597	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.01E-21	893	980	No hit	No description
SMART	SM00666	2.6E-24	896	978	IPR000270	PB1 domain
PROSITE profile	PS51745	20.444	896	978	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.6E-24	896	978	No hit	No description
Pfam	PF00564	2.2E-17	896	977	IPR000270	PB1 domain
CDD	cd06407	5.89E-31	897	977	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MERGVGFWAF PRGQTEGVST DASTRSTNVE SFNNVMEIMN LDAYAGWCSS PSATDQMFAS 60 YATFSPINQS YAPFEGMSSV DQHTGAFPPM DANMVVSSHD DGGEKMVFGQ NDDDQFHFVV 120 DSGDGGIGLV AERSKKSSQC GADGADMSNS MIVKSPSQPL AERMLRALAM FKESSGAGIL 180 AQVWIPMKND ENQYVLSTCE QPYLLDQALS GYREVSRKFT FDTETKPGAT PGLPGRVFSS 240 RIPEWTSNVL YYKEAEYLRV QYAVNHQVRG SIALPVLEDD ASESPCCAVL ELVTMKEKPN 300 FDLEMDHVCQ ALQAVNLRSI TPPRLDSQNL SNNQRDALAE ITDVLRAVCH AHKLPLALTW 360 IPCSFTKGDE SIRVHTRGCN ASLNEKCVLC VEDTTCYVSD KEMQGFVHAC MEHFLEEGEG 420 IVGKALQSNY PFFYPDVKEY HISEYPLVHH ARKCGLNAAV AIRLRSTFTG DDDYILEFFL 480 PISMKGSTEQ QLLLNNLSGT MQRICRSLRT VSDAELVGQG ATFGLQDGSV PCLPPIALSR 540 RNTQHTLDNN SDSVNETPLG ASNSKSAKMH VVDSREQTTI RSRRQIEKKR STAEKHVSLS 600 VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLKK IQTVLESVQG 660 VEGGLKFDPA TGGLVPAGSV IEDFDTRKNI FFPFEDVSIK NPTSVFQDVV SVPSTSANNK 720 ENSMVKMEGD SYIDGNQLSQ SNEINTLSGG DKSAVMSRFC YQPKLVALES SRPTSLNAIP 780 LTDSENVSLG SFLAKQGCRR WGLNYDTLDN FDRHFTSRCS FAKAVGGETD NKIKRDTEID 840 GDGGVIEHNQ ASSSAMTDSS NGSGSMMNGS SSSSRSRGGA EKYSMVELNC GDSGSTITVK 900 ATYKEDTIRF KFELSAGCLQ LYEEVAKRFK LQTGTFQLKY LDDEAEWVML VNDADLHECL 960 QILDFVGGRT LKFLVRDTPC AMGSSDSSNC FIASGS*

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MERGVGFWAF PRGQTEGVST DASTRSTNVE SFNNVMEIMN LDAYAGWCSS PSATDQMFAS  60
YATFSPINQS YAPFEGMSSV DQHTGAFPPM DANMVVSSHD DGGEKMVFGQ NDDDQFHFVV  120
DSGDGGIGLV AERSKKSSQC GADGADMSNS MIVKSPSQPL AERMLRALAM FKESSGAGIL  180
AQVWIPMKND ENQYVLSTCE QPYLLDQALS GYREVSRKFT FDTETKPGAT PGLPGRVFSS  240
RIPEWTSNVL YYKEAEYLRV QYAVNHQVRG SIALPVLEDD ASESPCCAVL ELVTMKEKPN  300
FDLEMDHVCQ ALQAVNLRSI TPPRLDSQNL SNNQRDALAE ITDVLRAVCH AHKLPLALTW  360
IPCSFTKGDE SIRVHTRGCN ASLNEKCVLC VEDTTCYVSD KEMQGFVHAC MEHFLEEGEG  420
IVGKALQSNY PFFYPDVKEY HISEYPLVHH ARKCGLNAAV AIRLRSTFTG DDDYILEFFL  480
PISMKGSTEQ QLLLNNLSGT MQRICRSLRT VSDAELVGQG ATFGLQDGSV PCLPPIALSR  540
RNTQHTLDNN SDSVNETPLG ASNSKSAKMH VVDSREQTTI RSRRQIEKKR STAEKHVSLS  600
VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLKK IQTVLESVQG  660
VEGGLKFDPA TGGLVPAGSV IEDFDTRKNI FFPFEDVSIK NPTSVFQDVV SVPSTSANNK  720
ENSMVKMEGD SYIDGNQLSQ SNEINTLSGG DKSAVMSRFC YQPKLVALES SRPTSLNAIP  780
LTDSENVSLG SFLAKQGCRR WGLNYDTLDN FDRHFTSRCS FAKAVGGETD NKIKRDTEID  840
GDGGVIEHNQ ASSSAMTDSS NGSGSMMNGS SSSSRSRGGA EKYSMVELNC GDSGSTITVK  900
ATYKEDTIRF KFELSAGCLQ LYEEVAKRFK LQTGTFQLKY LDDEAEWVML VNDADLHECL  960
QILDFVGGRT LKFLVRDTPC AMGSSDSSNC FIASGS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016550984.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	A0A2G2Y563	0.0	A0A2G2Y563_CAPAN; Protein NLP9
STRING	PGSC0003DMT400034189	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein