PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g82220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 34256 Da PI: 7.7273 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.5e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl CA00g82220 14 RGPWSPEEDAKLKEFIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ CA00g82220 69 GDFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.18 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.84E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.45E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.457 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGRAPCCDKN NVKRGPWSPE EDAKLKEFID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF 120 IHTSSNQRIK SPNLFLPPTT FPPQIQSQAI SNIFKDDYLE PISSLQPNFM YHNNNMNFQL 180 GTNNQYSYFL ESLMNPMQAS CSSSDGSCSQ IPRSNFEETQ KFTLDNYGNN GGTWADHDQK 240 PDGYFGNNHQ NHSSQFQYDT SNIEEVKELI SSSSSNGNGC NNNNNMLFFS DENKANIGYW 300 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF496586 | 1e-102 | JF496586.1 Capsicum annuum BLIND (BLIND) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576886.1 | 0.0 | PREDICTED: transcription factor RAX2-like isoform X1 | ||||
TrEMBL | A0A1U8H074 | 0.0 | A0A1U8H074_CAPAN; Transcription factor RAX2 | ||||
TrEMBL | A0A2G2ZDW4 | 0.0 | A0A2G2ZDW4_CAPAN; transcription factor RAX2-like isoform X1 | ||||
STRING | Solyc06g074910.2.1 | 1e-128 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-78 | myb domain protein 36 |