PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g81840
Common NameJERF1
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 376aa    MW: 41585.8 Da    PI: 4.566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g81840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-18104153255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++  +++++g
  CA00g81840 104 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 153
                 69*******.**********954...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.92104161IPR001471AP2/ERF domain
SMARTSM003803.9E-38104167IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21104162IPR016177DNA-binding domain
CDDcd000183.54E-32104162No hitNo description
Gene3DG3DSA:3.30.730.101.4E-31104162IPR001471AP2/ERF domain
PRINTSPR003675.9E-11105116IPR001471AP2/ERF domain
PfamPF008471.0E-10105153IPR001471AP2/ERF domain
PRINTSPR003675.9E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MCGGAIISDL VPPSRISRRL TAELLWGNSD LSKKKKNPGN YYSKPLNRSK FIDLDEEFEA  60
DFQDFKDYAD DDVDDVKPFG SKSVKSGDSS CDTEKSSKRK RKNQYRGIRQ RPWGKWAAEI  120
RDPRKGIRVW LGTFNSAEEA ARAYDVEARR IRGKKAKVNF PDGSPASASR RAVKPNPQEA  180
LREEILNTVQ PNTTYINNLD GGSDDSFGFF EEKPAAKQYG YENVSFTAGD MGLGSISPST  240
GTTNVYFSSD EGSNTFDCSD FGWGEPCPRT PEISSVLSEV LECNGTQFDE DARPEKKLKS  300
CSNASLPDED NTVHTLSEEL SAFESQMKFL QIPYLEGNWD ASVDAFVNTG AIQDGGNAMD  360
LWTFDDVPSL MGGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20104161260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4120790.0DQ412079.1 Capsicum annuum putative ethylene-responsive element binding protein (JERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312013.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A2G2ZB670.0A0A2G2ZB67_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000125470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-66related to AP2 12