PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g81250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 921aa MW: 102431 Da PI: 6.8833 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.6 | 6e-29 | 617 | 667 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ CA00g81250 617 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 667 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.427 | 606 | 687 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-24 | 620 | 667 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.25E-21 | 817 | 908 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 9.8E-21 | 819 | 903 | No hit | No description |
SMART | SM00666 | 6.8E-22 | 822 | 905 | IPR000270 | PB1 domain |
Pfam | PF00564 | 6.4E-15 | 822 | 904 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 21.154 | 822 | 905 | IPR000270 | PB1 domain |
CDD | cd06407 | 5.34E-39 | 823 | 904 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 921 aa Download sequence Send to blast |
MEDGAFTLND MLAKLSDNTT ATDFSFMGEF LSDGFWLEAT DQGSNYFCNQ PALPFTTTSS 60 LPSQSLSFDT NVSIPSTNQV AFQQETEKDK IADNLFVPQM DESSAPTRDN THTSPRPDSS 120 AFQVEGTQMN RRLWIGPNTL TNPNPTLSVK TRLVQAIEYL KNSTRDKDVL IQIWVPVKRG 180 GKHVLVTNNQ PYFINPNSQS LLEYRYVSQN YQFAAEKDSK ELVGLPGRVF LKKLPEWTPD 240 VRFFKREEYP RVNYAHQHNV RGSIAVPVFE SGSGTCLGVV EIVTTIQKTH YHPELEDVCK 300 ALEAVNLRSS GISSNPAKVK DCNESYLAAL AEIQYILTCV CDTHKLPLAQ TWAPCIQQGK 360 GGCLQSDEHF ASCVSTVDSA CYVRDPQVVP FHFACSEYHL LKGEGVAGGA FNTNQPCFAT 420 DITAFSKAEY PLSHHARMFG LCSAVAIRLR SIYTGSADFV LEFFLPLDCK NTEDQKQMLS 480 SLSSVIQQSC RSLRVVTDQE LQEEKVSLSV GGSHEEEARK PVSPSYRDQD SSSWLSEMMD 540 AQRKGKGAAV SENHRDKQEE NFKVTATPWD YTQREPIHAS TFSEPNQSFV AKGGSFDFSS 600 HSSGAKRAGE RRRSKTEKSI SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP 660 SRKIKKVGHS LQKLQLVIDS VHGAEGAIKL SSFYTNFPEL SSPNNPGTSN LSASKDDDHL 720 QQVNTQLDVS PVTTTSKSTS SSGSHNSSSS LLCSTTNVFA TTEEHPARGM LKRAHTETEL 780 HDMGQEETKL LVRSQSQKIQ SNHNSSEPLR PLPNQLLQDS GTFKVKAIFG KEKIRFSLQS 840 HWGFGDIQHE VLRRFNVEDV GKIDLKYLDD DDEWVLLTCD ADLEECIDIH KLSKRRTIKV 900 SLHHTYHHNL GSSFGSSGPA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240198 | 0.0 | AC240198.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-219g5 map 1, complete sequence. | |||
GenBank | AC246586 | 0.0 | AC246586.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-20o20 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016540054.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_016540055.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | A0A2G2XVS5 | 0.0 | A0A2G2XVS5_CAPAN; Uncharacterized protein | ||||
STRING | XP_009623517.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |