PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g81250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Nin-like
Protein Properties Length: 921aa    MW: 102431 Da    PI: 6.8833
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g81250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.66e-29617667252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  CA00g81250 617 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 667
                 799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.427606687IPR003035RWP-RK domain
PfamPF020421.1E-24620667IPR003035RWP-RK domain
SuperFamilySSF542771.25E-21817908No hitNo description
Gene3DG3DSA:3.10.20.2409.8E-21819903No hitNo description
SMARTSM006666.8E-22822905IPR000270PB1 domain
PfamPF005646.4E-15822904IPR000270PB1 domain
PROSITE profilePS5174521.154822905IPR000270PB1 domain
CDDcd064075.34E-39823904No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MEDGAFTLND MLAKLSDNTT ATDFSFMGEF LSDGFWLEAT DQGSNYFCNQ PALPFTTTSS  60
LPSQSLSFDT NVSIPSTNQV AFQQETEKDK IADNLFVPQM DESSAPTRDN THTSPRPDSS  120
AFQVEGTQMN RRLWIGPNTL TNPNPTLSVK TRLVQAIEYL KNSTRDKDVL IQIWVPVKRG  180
GKHVLVTNNQ PYFINPNSQS LLEYRYVSQN YQFAAEKDSK ELVGLPGRVF LKKLPEWTPD  240
VRFFKREEYP RVNYAHQHNV RGSIAVPVFE SGSGTCLGVV EIVTTIQKTH YHPELEDVCK  300
ALEAVNLRSS GISSNPAKVK DCNESYLAAL AEIQYILTCV CDTHKLPLAQ TWAPCIQQGK  360
GGCLQSDEHF ASCVSTVDSA CYVRDPQVVP FHFACSEYHL LKGEGVAGGA FNTNQPCFAT  420
DITAFSKAEY PLSHHARMFG LCSAVAIRLR SIYTGSADFV LEFFLPLDCK NTEDQKQMLS  480
SLSSVIQQSC RSLRVVTDQE LQEEKVSLSV GGSHEEEARK PVSPSYRDQD SSSWLSEMMD  540
AQRKGKGAAV SENHRDKQEE NFKVTATPWD YTQREPIHAS TFSEPNQSFV AKGGSFDFSS  600
HSSGAKRAGE RRRSKTEKSI SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP  660
SRKIKKVGHS LQKLQLVIDS VHGAEGAIKL SSFYTNFPEL SSPNNPGTSN LSASKDDDHL  720
QQVNTQLDVS PVTTTSKSTS SSGSHNSSSS LLCSTTNVFA TTEEHPARGM LKRAHTETEL  780
HDMGQEETKL LVRSQSQKIQ SNHNSSEPLR PLPNQLLQDS GTFKVKAIFG KEKIRFSLQS  840
HWGFGDIQHE VLRRFNVEDV GKIDLKYLDD DDEWVLLTCD ADLEECIDIH KLSKRRTIKV  900
SLHHTYHHNL GSSFGSSGPA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401980.0AC240198.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-219g5 map 1, complete sequence.
GenBankAC2465860.0AC246586.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-20o20 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540054.10.0PREDICTED: protein NLP2
RefseqXP_016540055.10.0PREDICTED: protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A2G2XVS50.0A0A2G2XVS5_CAPAN; Uncharacterized protein
STRINGXP_009623517.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15982467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein