PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g81170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 227aa MW: 25278.1 Da PI: 4.903 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.1 | 6.2e-15 | 13 | 67 | 26 | 80 |
trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 + +p+W++vs+++r++ r+p+qC++ w+n+ ++kkik++e++ s+s + CA00g81170 13 KPEPKWDSVSSYCRQHRADRGPVQCRKCWSNMISDFKKIKTWESQADGSSESYWI 67 6699****************************************98655555665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.3E-7 | 12 | 64 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGGGSTSIFG SDKPEPKWDS VSSYCRQHRA DRGPVQCRKC WSNMISDFKK IKTWESQADG 60 SSESYWIISN NLRREKRLPD SFDRKVYNVL DGKEVSAEAY QLALVTIITD DKFGYGIETV 120 EEEKEEENDD VSHTGEYTME DDVLPPATEE VGSNPLKEGD VKDKKAKSIP SPSPISGKLE 180 VFQKFALFST RTSAHTLTQT SVPTLFSCLI CNSQSTCCSF TNIRSN* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-147 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567545.1 | 1e-108 | PREDICTED: trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A2G2Y592 | 1e-123 | A0A2G2Y592_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400036757 | 4e-92 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 7e-35 | Trihelix family protein |