PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g78240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 64aa MW: 7173.34 Da PI: 10.6176 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.7 | 5.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s r vtfskRr g++KKAeELS+LCdae+ vi+fs t+kly ++s CA00g78240 9 KKIENISSRRVTFSKRRSGLFKKAEELSILCDAEIGVIVFSDTDKLYKFAS 59 78***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.94E-28 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.361 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MGRGKIEMKK IENISSRRVT FSKRRSGLFK KAEELSILCD AEIGVIVFSD TDKLYKFASS 60 NSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-18 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 6e-18 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 6e-18 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 6e-18 | 1 | 61 | 1 | 61 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 7e-62 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016543736.1 | 4e-36 | PREDICTED: agamous-like MADS-box protein AGL18 | ||||
Swissprot | Q6VAM4 | 7e-28 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A1U8EBE4 | 8e-35 | A0A1U8EBE4_CAPAN; agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A2G2YNT4 | 7e-35 | A0A2G2YNT4_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3BHA1 | 8e-35 | A0A2G3BHA1_CAPCH; Uncharacterized protein | ||||
STRING | Solyc10g080030.1.1 | 5e-32 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51860.2 | 1e-27 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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