PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g77790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 335aa    MW: 37909.2 Da    PI: 5.2403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g77790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-5361331128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+nratksgyWkatgkd++v++ + 
  CA00g77790   6 LPPGFRFHPTDEELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDKKYPNGSRTNRATKSGYWKATGKDRKVVC-HP 102
                 79****************************.99**************95334445667**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 e+vg +ktLvfy+grap g +tdWvmheyrl
  CA00g77790 103 EVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                 9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-624156IPR003441NAC domain
PROSITE profilePS5100558.366156IPR003441NAC domain
PfamPF023651.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAGTSLPPGF RFHPTDEELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DLEWFFFCPR DKKYPNGSRT NRATKSGYWK ATGKDRKVVC HPEVVGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDATQG NPSFQGPFAL CRVIKRNDVS LKTKDVQGVK QVGCSSTAGR  180
FTSVNEPIAL SDETPTQSTY MSNDSNYSTP ITSPYQTTQL GDYESAIAAN SANLWMPPSM  240
ILDSSKECPQ GQNASSYCPQ YDFPNMTPWQ PNEFTSNSTF PDFRGEVELS GDLSNFGCMS  300
PYSIHGSYMG FYGNEDTAYE GFDQNNSYRN PNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-53116212171NO APICAL MERISTEM PROTEIN
1ut4_B3e-53116212171NO APICAL MERISTEM PROTEIN
1ut7_A3e-53116212171NO APICAL MERISTEM PROTEIN
1ut7_B3e-53116212171NO APICAL MERISTEM PROTEIN
3swm_A4e-53116215174NAC domain-containing protein 19
3swm_B4e-53116215174NAC domain-containing protein 19
3swm_C4e-53116215174NAC domain-containing protein 19
3swm_D4e-53116215174NAC domain-containing protein 19
3swp_A4e-53116215174NAC domain-containing protein 19
3swp_B4e-53116215174NAC domain-containing protein 19
3swp_C4e-53116215174NAC domain-containing protein 19
3swp_D4e-53116215174NAC domain-containing protein 19
4dul_A3e-53116212171NAC domain-containing protein 19
4dul_B3e-53116212171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575709.10.0PREDICTED: NAC domain-containing protein 45-like
SwissprotO496971e-98NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A1U8H5L60.0A0A1U8H5L6_CAPAN; NAC domain-containing protein 45
TrEMBLA0A2G3AFE50.0A0A2G3AFE5_CAPAN; NAC domain-containing protein 45-like
STRINGPGSC0003DMT4000451290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62561635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-101NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]