PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g75200

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 347aa MW: 39015.6 Da PI: 9.0307

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g75200	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	125.6	1.8e-39	25	125	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw+ + ie++t+++nh+lPlari+ki k ++vk+isae+P+l+skacelfi e+tlrsw ha+en+r +++ +d+aaa+ rtd fdfl v CA00g75200 25 QLEMFWHFKrheIEHSTNLRNHQLPLARIRKIAKDTPNVKKISAEVPILFSKACELFIQEFTLRSWFHADENNRYSIQGNDVAAAIRRTDHFDFLAH-V 122 799999866566**********************************************************************************975.5 PP NF-YC 97 prd 99 p+d CA00g75200 123 PTD 125 555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.51E-26	31	119	IPR009072	Histone-fold
Pfam	PF00808	1.5E-14	47	110	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.7E-27	48	121	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MNAAAVAAAA VGGYPYNHQL AQKQQLEMFW HFKRHEIEHS TNLRNHQLPL ARIRKIAKDT 60 PNVKKISAEV PILFSKACEL FIQEFTLRSW FHADENNRYS IQGNDVAAAI RRTDHFDFLA 120 HVPTDEIMGE ATAAATVTGV VGSTSSGVPD YNPPMGQPGP SEVTMGRASV PLVHPSAYFQ 180 PQSWQPTPSL PQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 RGSLSRHHPK SASGFGSLLR IILIIPLVME VTLMATGNFV ISLSWG*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MNAAAVAAAA VGGYPYNHQL AQKQQLEMFW HFKRHEIEHS TNLRNHQLPL ARIRKIAKDT  60
PNVKKISAEV PILFSKACEL FIQEFTLRSW FHADENNRYS IQGNDVAAAI RRTDHFDFLA  120
HVPTDEIMGE ATAAATVTGV VGSTSSGVPD YNPPMGQPGP SEVTMGRASV PLVHPSAYFQ  180
PQSWQPTPSL PQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
RGSLSRHHPK SASGFGSLLR IILIIPLVME VTLMATGNFV ISLSWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-31	36	122	6	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563852.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563853.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563854.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563855.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563856.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563857.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563858.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563859.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Refseq	XP_016563860.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like
Swissprot	Q9SMP0	2e-51	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A1U8G566	1e-138	A0A1U8G566_CAPAN; nuclear transcription factor Y subunit gamma-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-46	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]