PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g74550
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21617 Da    PI: 10.4336
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g74550genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.56.4e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  CA00g74550  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                79***********************************************96 PP
2K-box101.31.3e-3381172899
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +++++++++ ++e+ +Lk+++e Lqr+qR++lGedL++Ls k+L+qLe+qLe+slk+iRs+K++++l+q+ +lq++e++l e n+ Lr+k++
  CA00g74550  81 NQSATDTQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLSTKDLEQLENQLESSLKQIRSRKTQFMLDQLADLQQREQMLAESNRLLRRKVK 172
                 3688999***********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002653.76E-42278No hitNo description
SuperFamilySSF554552.35E-34283IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.4E-2983171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.69387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SSMVKTIEKY QRCSYATLEA NQSATDTQNN YHEYLRLKAR VELLQRSQRN FLGEDLGTLS  120
TKDLEQLENQ LESSLKQIRS RKTQFMLDQL ADLQQREQML AESNRLLRRK VKTLMTNKIK  180
LYKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-28921682298Developmental protein SEPALLATA 3
4ox0_B2e-28921682298Developmental protein SEPALLATA 3
4ox0_C2e-28921682298Developmental protein SEPALLATA 3
4ox0_D2e-28921682298Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1298750.0AF129875.1 Capsicum annuum MADS box transcription factor MADS1 (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311550.11e-120MADS-box protein CMB1-like
SwissprotQ7Y0401e-119EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A2G3CYY91e-119A0A2G3CYY9_CAPCH; Agamous-like MADS-box protein AGL3
STRINGSolyc03g114840.2.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.15e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]