PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g74540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 233aa MW: 25582.9 Da PI: 9.8513 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.3 | 9.4e-43 | 150 | 225 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dls +k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ CA00g74540 150 CQVQGCGKDLSPCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 225 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-34 | 144 | 211 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.701 | 147 | 224 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.16E-39 | 148 | 228 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-32 | 150 | 223 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MESWSYFSGG KGFVSDESVS GKNGVMGWEL KTPSSYGSTV ICSSQHGSDN PIFQELGSPN 60 LMRKPMFSDQ MRGVGNIFGS VAGAFSGEDK SSSISRDTSL IDLKLGRFPD HVDANIFKSP 120 KSMPSFTTAE SIVPAKRMRA GGVNSHKPFC QVQGCGKDLS PCKDYHKRHK VCEVHSKTAK 180 VIVNGIEQRF CQQCSRFHLL AEFDDGKRSC RKRLAGHNER RRKPHTGTHS GY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-31 | 149 | 223 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013457 | 1e-118 | BT013457.1 Lycopersicon esculentum clone 132113R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545418.1 | 1e-168 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_016545419.1 | 1e-168 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2G3CYZ6 | 1e-167 | A0A2G3CYZ6_CAPCH; Squamosa promoter-binding-like protein 3 | ||||
STRING | Solyc03g114850.2.1 | 1e-121 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-48 | SBP family protein |