PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g71020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29118.1 Da PI: 9.3298 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+++ + G ++W+++++ g++R++k+c++rw++yl CA00g71020 16 KGPWTKDEDEKLIEYTYKNGHNNWRLVPKNAGLKRCGKSCRLRWNNYL 63 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.3e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eE++++++++ +G++ W++Ia +++ Rt++++k+++++yl CA00g71020 69 RGGFTKEEEQIIINLHSSFGNK-WSRIATHLP-ERTDNEIKNFYNTYL 114 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.973 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 17 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.74E-12 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 18.807 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.23E-12 | 72 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRYPCCNYD DSDLKKGPWT KDEDEKLIEY TYKNGHNNWR LVPKNAGLKR CGKSCRLRWN 60 NYLKPGIKRG GFTKEEEQII INLHSSFGNK WSRIATHLPE RTDNEIKNFY NTYLGKKLLK 120 LGIDPKTHKP ISHINSLIFT PTLRLQAQVT LQAKIQQFLQ SRPNSSLNTN LFSSIQENFL 180 SNPIQGAIYQ FLNCLQPNFT ITTPCLDNTT NSLPNGYSSI SNSVEVPSEK INKIETIQKI 240 STLSLCEEDT QTEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 13 | 118 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240410.1 | 1e-103 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9S9Z2 | 7e-61 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2G2XWU0 | 0.0 | A0A2G2XWU0_CAPAN; Transcription factor MYB28 | ||||
STRING | XP_009789695.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-67 | myb domain protein 9 |
Publications ? help Back to Top | |||
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