PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g69840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 39953.2 Da PI: 6.5093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ +ar g+ R++k+c++rw +yl CA00g69840 30 KGLWSPEEDEKLMHYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 77 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 83 | 127 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E+e +++++ +lG++ W+ Ia++++ gRt++++k++w++ CA00g69840 83 RGAFLPQEEEHIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNST 127 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.586 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-27 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-8 | 33 | 77 | No hit | No description |
PROSITE profile | PS51294 | 23.708 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-13 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 83 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 85 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.78E-9 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MRKPEFSSSS SSGKNNNNNT NNNTNVKLRK GLWSPEEDEK LMHYMLTNGQ GCWSDVARNA 60 GLQRCGKSCR LRWINYLRPD LNRGAFLPQE EEHIIHLHSL LGNRWSQIAA RLPGRTDNEI 120 KNFWNSTLKK RLKNSSSSST PSPNASDSSS DHLSKDLNIG ITQQRFMTMQ KHNLMSINMD 180 STSSSSSSMA LNTINIDPLP TLDHTLINMS NGFNIAPSYL STTQPCMVQG GNIVGTNNGG 240 SLFYGNNHGI FGGNLSMEGH ELYVPPLENV SIDYNQNVEN GNYVERSNHH LNNNNLNNMS 300 SLNSTSHNFN SSSNIKVENF GGIGNYWEGD ELKVGEWDLE ELMKDVSPFP FLDFQVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-25 | 25 | 132 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548901.1 | 0.0 | PREDICTED: transcription factor MYB46 | ||||
TrEMBL | A0A2G2YG47 | 0.0 | A0A2G2YG47_CAPAN; Transcription factor MYB32 | ||||
STRING | PGSC0003DMT400018995 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 7e-66 | myb domain protein 83 |