PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g69330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 177aa    MW: 20090.4 Da    PI: 7.6694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g69330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18755254
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  CA00g69330  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-33664No hitNo description
SuperFamilySSF541711.5E-20765IPR016177DNA-binding domain
SMARTSM003808.9E-41770IPR001471AP2/ERF domain
PROSITE profilePS5103220.719764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-33764IPR001471AP2/ERF domain
PfamPF008471.9E-11756IPR001471AP2/ERF domain
PRINTSPR003672.8E-11819IPR001471AP2/ERF domain
PRINTSPR003672.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFAFNDNDS ESSSSTKYLS SALIAKLQRC QMKSLSMANN RPKLEDQSSQ LGNRGDHGIA  120
SRRNVQMSAE MPVSYEGQAE STHTQQFKSL EDHHIEQMIE ELLDYGSIEL SSVLQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17871670ATERF1
3gcc_A4e-17871670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5479762e-76KF547976.1 Solanum melongena cultivar Pusa Uttam ethylene responsive factor 52 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576998.11e-131PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW55e-64ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1U8H7D71e-129A0A1U8H7D7_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G2ZBT21e-129A0A2G2ZBT2_CAPAN; ethylene-responsive transcription factor ERF003-like
STRINGSolyc06g068360.2.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]