PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA00g67910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 28387.8 Da PI: 10.7686 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 133 | 183 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +rkr +lg++ t e+Aa a+++a+ k++g CA00g67910 133 RYRGVRRRP-WGKFAAEIRDPDR--RRKRLWLGTYETSEDAALAYDQAAFKMHG 183 7********.**********833..46**************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.5E-37 | 133 | 197 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 133 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 133 | 192 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.447 | 133 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-15 | 133 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 134 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-23 | 141 | 193 | No hit | No description |
PRINTS | PR00367 | 6.0E-10 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MIGQAYKIIN RENINPSNSS TLHSKTPVTK IARNYSSKQN FIRAKKMNPF DQNCSFSEIS 60 SDFSKSFSPM NSSNATPNNS PSSSFDSFLW DENINEETMY LQSHKKPKPG HKDKMQGPRE 120 EAREESTRQD WRRYRGVRRR PWGKFAAEIR DPDRRRKRLW LGTYETSEDA ALAYDQAAFK 180 MHGSKARLNF PHLIGPNMPE PPRVTARRCS RSLEPKPPSS SPSSENGTRK RNIDVINSIA 240 KAKSFWS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-24 | 132 | 191 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 137 | 157 | RRRPWGKFAAEIRDPDRRRKR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557636.1 | 1e-148 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A1U8FEH8 | 1e-146 | A0A1U8FEH8_CAPAN; ethylene-responsive transcription factor 2-like | ||||
STRING | XP_009609536.1 | 1e-68 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-28 | ethylene-responsive element binding factor 13 |