PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g67900

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 208aa MW: 23081.5 Da PI: 8.8447

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g67900	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.6	2.3e-16	91	142	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr++ +g ++AeIrdp + k +r +lg++ t+e+Aa a+++a+ k++g CA00g67900 91 TRYIGVRRRQ-WGTFAAEIRDP---NrKGARSWLGTYQTPEDAALAYDQAAFKIRG 142 589**887.******9...6566***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.2E-11	91	142	IPR001471	AP2/ERF domain
CDD	cd00018	8.33E-28	91	152	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.5E-29	92	151	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-31	92	156	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.273	92	150	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-21	92	151	IPR016177	DNA-binding domain
PRINTS	PR00367	9.4E-11	93	104	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.4E-11	132	152	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MNTNPADAAF FSLSEFDLLE SIKQHLLNDS DFSEFFSSMS YSSNNFELPN SPNSSFGSSP 60 STGSHEKSES EEDTNVPTVA AREEKVSGDW TRYIGVRRRQ WGTFAAEIRD PNRKGARSWL 120 GTYQTPEDAA LAYDQAAFKI RGSKARLNFP HLIGSNMPEP ARLTARRRTR SPEPSDASST 180 SSENGTRKRK IDVINSIAKA KYFVIVI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-24	93	156	6	69	ATERF1
3gcc_A	3e-24	93	156	6	69	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544939.1	1e-151	PREDICTED: ethylene-responsive transcription factor 2-like
Swissprot	Q40479	2e-38	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A1U8EM33	1e-150	A0A1U8EM33_CAPAN; Ethylene-responsive transcription factor 2
TrEMBL	A0A2G3AMD8	1e-150	A0A2G3AMD8_CAPAN; ethylene-responsive transcription factor 2-like
STRING	PGSC0003DMT400097101	1e-102	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-36	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]