PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g67630

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 757aa MW: 82397.2 Da PI: 5.9771

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g67630	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	335.8	8e-103	395	755	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+++Ae v++g+ laq +Larl+++ sp g+p+ R+a++ +eAL+ l+ ++++l +++++s+ + + ++ a+k fse+sP+ +f+++t+Nq CA00g67630 395 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFHCKEALQLLLHANTNNLNASMASSSPF--TLIFKIGAYKSFSEISPVAQFANFTCNQ 491 689*************************************************999999988555544..5*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..rvk 197 a+le ++g er+Hi+Dfdi++G+QW++L+q+La R++g+p+l+iT+++sp+++++ el t+e+L +fA+e+++ fef++l +++++ ++L ++ CA00g67630 492 ALLEVLDGFERIHIVDFDIGYGGQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRENLIHFASEINMAFEFEILSIDSFNST-SWSLppLIS 589 ****************************************************************************977766665.444533478 PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++Ea+aVnl ++ + + ++sl+ vL++vk+lsP++vv v++ +d+++ +F +++++al+ ys l++sl+a + ++ +k+Er+l+++ i+ CA00g67630 590 ENEAIAVNLPVSSLSSY--QLSLPL----VLRFVKQLSPRIVVSVDRGCDRTDLPFPNHVIQALQSYSNLLESLDAV-NVNFDALQKIERFLVQPGIER 681 8******877776..555555....*****************************************665.3466999********** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v+ + ++ e+ ++Wr + ++GF+p++ls+++++qa++++++++++g++ve+++ slvl+W++++L+s+SaWr CA00g67630 682 IVMGRFRS----PEKTQHWRTLFLSSGFSPLSLSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISASAWR 755 998877....9****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.226	368	735	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-100	395	755	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MKGMPLPFGF EGKGVLELDV LFNKNTSILN SWNHNNNSKE SCYLVNSPSA VLDTIRSPRP 60 LTSSSTLSSS LGDGDTAGGG VAAVSANPSS KWRQQDNTTA TSSNVGGAES ELQQVQTPSL 120 EMGSAAAAAA STGGEKCAME EWEGGLPESV MASPCQEQSI LRWIMGDVDD PSMANLNRVL 180 QVSGPGDYEF NGGFGVVDQG FGVDPVGQIG SFMPAISSSS SFPNTRMNSD KIGLVSNPPP 240 PANLLQNPIF PSLSNNLGPI AFGQTQQQPF ESTDLKPHSF NSQFLINQHQ TQIPQNPSFL 300 LPLPFGQQEQ NLVLPPQAKR HNPGLEPGSQ ISKGLFLDAG HQQQPTPPQG LAPQLQLLPH 360 FRPGAMGTKP KMVGEEMGQF HQLQQQQQQQ QQAIIDQLFK AAELVQTGNP VLAQGILARL 420 NHQLSPIGKP FYRAAFHCKE ALQLLLHANT NNLNASMASS SPFTLIFKIG AYKSFSEISP 480 VAQFANFTCN QALLEVLDGF ERIHIVDFDI GYGGQWASLM QELALRSGGA PTLKITALAS 540 PSTHDQLELG LTRENLIHFA SEINMAFEFE ILSIDSFNST SWSLPPLISE NEAIAVNLPV 600 SSLSSYQLSL PLVLRFVKQL SPRIVVSVDR GCDRTDLPFP NHVIQALQSY SNLLESLDAV 660 NVNFDALQKI ERFLVQPGIE RIVMGRFRSP EKTQHWRTLF LSSGFSPLSL SNFTESQAEC 720 VVKRTPVRGF HVEKRQSSLV LCWQRKELIS ASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MKGMPLPFGF EGKGVLELDV LFNKNTSILN SWNHNNNSKE SCYLVNSPSA VLDTIRSPRP  60
LTSSSTLSSS LGDGDTAGGG VAAVSANPSS KWRQQDNTTA TSSNVGGAES ELQQVQTPSL  120
EMGSAAAAAA STGGEKCAME EWEGGLPESV MASPCQEQSI LRWIMGDVDD PSMANLNRVL  180
QVSGPGDYEF NGGFGVVDQG FGVDPVGQIG SFMPAISSSS SFPNTRMNSD KIGLVSNPPP  240
PANLLQNPIF PSLSNNLGPI AFGQTQQQPF ESTDLKPHSF NSQFLINQHQ TQIPQNPSFL  300
LPLPFGQQEQ NLVLPPQAKR HNPGLEPGSQ ISKGLFLDAG HQQQPTPPQG LAPQLQLLPH  360
FRPGAMGTKP KMVGEEMGQF HQLQQQQQQQ QQAIIDQLFK AAELVQTGNP VLAQGILARL  420
NHQLSPIGKP FYRAAFHCKE ALQLLLHANT NNLNASMASS SPFTLIFKIG AYKSFSEISP  480
VAQFANFTCN QALLEVLDGF ERIHIVDFDI GYGGQWASLM QELALRSGGA PTLKITALAS  540
PSTHDQLELG LTRENLIHFA SEINMAFEFE ILSIDSFNST SWSLPPLISE NEAIAVNLPV  600
SSLSSYQLSL PLVLRFVKQL SPRIVVSVDR GCDRTDLPFP NHVIQALQSY SNLLESLDAV  660
NVNFDALQKI ERFLVQPGIE RIVMGRFRSP EKTQHWRTLF LSSGFSPLSL SNFTESQAEC  720
VVKRTPVRGF HVEKRQSSLV LCWQRKELIS ASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-34	394	755	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016545537.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A2G3AMJ4	0.0	A0A2G3AMJ4_CAPAN; Scarecrow-like protein 22
STRING	PGSC0003DMT400066799	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-128	GRAS family protein