PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g66450

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 79aa MW: 9005.63 Da PI: 10.4588

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g66450	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.4	1.6e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+gklye++s CA00g66450 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.669	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.36E-38	2	61	No hit	No description
SuperFamily	SSF55455	1.57E-31	2	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-34	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFCSS 60 SRYVCIFIIS HLYSSSVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-21	1	61	1	61	MEF2C
5f28_B	2e-21	1	61	1	61	MEF2C
5f28_C	2e-21	1	61	1	61	MEF2C
5f28_D	2e-21	1	61	1	61	MEF2C
6byy_A	2e-21	1	61	1	61	MEF2 CHIMERA
6byy_B	2e-21	1	61	1	61	MEF2 CHIMERA
6byy_C	2e-21	1	61	1	61	MEF2 CHIMERA
6byy_D	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_A	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_B	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_C	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_D	2e-21	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor active in inflorescence development and floral organogenesis.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX402926	3e-92	JX402926.1 Capsicum annuum MADS-box transcription factor MADS-RIN mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546327.1	1e-37	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Swissprot	O04067	1e-35	AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBL	A0A2G2YQH6	6e-48	A0A2G2YQH6_CAPAN; Uncharacterized protein
STRING	cassava4.1_030388m	3e-36	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-38	MIKC_MADS family protein

Publications ? help Back to Top
Bonhomme F,Sommer H,Bernier G,Jacqmard A Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis. Plant Mol. Biol., 1997. 34(4): p. 573-82 [PMID:9247539]