PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g64840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 418aa MW: 46456.6 Da PI: 8.8949 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.8e-17 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l ++v+++G g+W+++ r g+ R++k+c++rw ++l CA00g64840 43 KGPWTTTEDTILMEYVRKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 90 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.2e-15 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++++ G++ W++ a+ ++ gRt++++k++w++ CA00g64840 96 KGAFSPEEERIIIELHAKIGNK-WARMAAQLP-GRTDNEIKNYWNT 139 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.235 | 38 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-29 | 42 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 43 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-23 | 44 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.96E-10 | 45 | 90 | No hit | No description |
PROSITE profile | PS51294 | 25.536 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 96 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.76E-11 | 98 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 98 | 144 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MNIYDLSFFF YFAGKKEGLM ATNDRGMKNS GGKNGGNRQV VKKGPWTTTE DTILMEYVRK 60 HGEGNWNAVQ RNSGLMRCGK SCRLRWANHL RPNLKKGAFS PEEERIIIEL HAKIGNKWAR 120 MAAQLPGRTD NEIKNYWNTR LKRRQRANLP IYPQELQSQN QPEHNQAQQS LISSAFDPQR 180 TTYNNPPSLS LLGILNPSSM RPPITHQFPL NGNKNFRNPP KGLSMTPPSS MQNSQFSSLP 240 VSVSNNNFGH DLFNSTPMPS FQQTYPDFSS TMRPFLGNIP SNQNGLMFDM GINSINYPSG 300 QLSMPVTTSS SSENTSSGFG SSDANNYTNV GGLSRGNSGL LEDLLEESQT LTRAMKIEER 360 GKSLWENYGL VEKELGDHQD GAIFTEESVY SFAHGDDVTL YNNSESSSSN PNASPGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 43 | 144 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579400.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
TrEMBL | A0A1U8H7T7 | 0.0 | A0A1U8H7T7_CAPAN; Myb-related protein | ||||
TrEMBL | A0A2G2Z388 | 0.0 | A0A2G2Z388_CAPAN; myb-related protein 306-like | ||||
STRING | XP_009592281.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 7e-76 | myb domain protein 101 |