PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g64610
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 302aa    MW: 32771.4 Da    PI: 9.3615
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g64610genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.73e-392383363
      zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                + a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  CA00g64610 23 DGAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRSSS 83
                56789****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-241671IPR003851Zinc finger, Dof-type
PfamPF027011.7E-332580IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0122680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGAEIGSRPG GEIINKKARP VKDGAINCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW  60
TEGGTLRNVP VGGGSRKNKR SSSSQKLPDL NPNLNSHVPD HQLHQNPNKI NIVGSTSQDL  120
SLGFRTVPHD HQTSFHGVLP QFLELPKMDA SNNHLVNRNT YFCLLNYVSL TSCSTSGSTQ  180
ISALELLRTG IASRGFTSFI SSPSTPDLNA LYSTSGFPFQ ELKLSGGNTH DHTASLSNYP  240
SGGPGVQENG GARIMFPLGG LKQLSSTNEA DHHHHQTKGQ ENNNSNAGLY WNGMLGAGGS  300
W*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-90HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538283.10.0PREDICTED: dof zinc finger protein DOF2.5-like isoform X1
TrEMBLA0A2G2YYB70.0A0A2G2YYB7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000003491e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-48Dof family protein