PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g63410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 787aa    MW: 87776.6 Da    PI: 5.7328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g63410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.12.6e-1164147832374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ cA+av++g+++ a++lL+++++ + p gd mqRla+yf+ +L+ar+a+s++++yk l +++ s    ++ l+a++l+  ++P+ ++s +  N+
  CA00g63410 414 STLLTLCAQAVAAGNQRTANELLKQIRQSSCPMGDGMQRLAHYFADGLEARMAGSGTHIYKVLIARPVS---AADILKAYHLLLAACPFRTVSSFFSNK 509
                 57899**********************************************************999999...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +Il+ +e++++vHiiD++i+ G+QWp L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef++ +a+++e+++le+L+++
  CA00g63410 510 TILNLAEKASTVHIIDIGIMWGFQWPGLIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAESFKVPFEFHA-IAQKWETIKLEDLKIS 607
                 ****************************************************9*****************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gEal+Vn+ ++  +llde+v ++s+rd +L+l+++l+P+v++    +  +n++ F+ rf eal +ys+lfd+lea++pre +er+ vE+ +lg+e++n
  CA00g63410 608 KGEALVVNCLFRFRNLLDETVVVNSPRDVFLNLLRRLNPDVFIQGIVNGAYNAPFFVSRFREALFHYSSLFDMLEATIPREMHERMLVEKNILGQEAMN 706
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+acegaer+er et+++W+ r+++aGF+++pl+++++  +    + ++++ ++++ +s++l++gWk+r  v++S W+
  CA00g63410 707 VIACEGAERIERPETYKQWQIRIMKAGFRQLPLDQEIMRLITEGFKVYDKN-FMIDVDSEWLLQGWKGRFGVALSTWK 783
                 ***************************************999999999855.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.169387764IPR005202Transcription factor GRAS
PfamPF035149.0E-114414783IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MELYEAESAI KLEDEACSFL PDPNLINNLR VSDNLVNRSV DISPFQSDIG PNTLVPSTAD  60
DFHEDYDFGD GALKYINQML MEEDIEEKTC MFQESAALQA AERSFYEVIG EKYPSSANHE  120
KPSSLGQNEP YAVDLSGFKY SGNDGLPCPN WILDLGEDDV SHVSHVPDGV ALHSTSRSSY  180
SPSGTVTDVL VDSPVSTLGI ADIFSDREPI MKFKKGVEET SKLLGVALRS TSVSSHSLSG  240
TATDLPVDSP VSTIRIPDIF SDGESIMQFK KGVEEASKFL PTGNSLLADV RYNVVGKEQY  300
EERKDAVVKF EKYGEKQSPE RSRGKKNTLH EDIVDSTEGR SNKQSAVFSE PTVRSEMFDR  360
VLLCSAGKNE SALRETLQAI SRQNALENGL SKGSNGKKFQ GKKKGRKRDV VDLSTLLTLC  420
AQAVAAGNQR TANELLKQIR QSSCPMGDGM QRLAHYFADG LEARMAGSGT HIYKVLIARP  480
VSAADILKAY HLLLAACPFR TVSSFFSNKT ILNLAEKAST VHIIDIGIMW GFQWPGLIQR  540
LSSRPGGPPK LRITGIDFPN PGFRPAERVE ETGRRLANYA ESFKVPFEFH AIAQKWETIK  600
LEDLKISKGE ALVVNCLFRF RNLLDETVVV NSPRDVFLNL LRRLNPDVFI QGIVNGAYNA  660
PFFVSRFREA LFHYSSLFDM LEATIPREMH ERMLVEKNIL GQEAMNVIAC EGAERIERPE  720
TYKQWQIRIM KAGFRQLPLD QEIMRLITEG FKVYDKNFMI DVDSEWLLQG WKGRFGVALS  780
TWKAAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5442078225377Protein SCARECROW
5b3h_D5e-5442078225377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573543.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_016573546.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A1U8GQL60.0A0A1U8GQL6_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZJK80.0A0A2G2ZJK8_CAPAN; scarecrow-like protein 30
STRINGPGSC0003DMT4000699490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14