PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g63410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 787aa MW: 87776.6 Da PI: 5.7328 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.1 | 2.6e-116 | 414 | 783 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ cA+av++g+++ a++lL+++++ + p gd mqRla+yf+ +L+ar+a+s++++yk l +++ s ++ l+a++l+ ++P+ ++s + N+ CA00g63410 414 STLLTLCAQAVAAGNQRTANELLKQIRQSSCPMGDGMQRLAHYFADGLEARMAGSGTHIYKVLIARPVS---AADILKAYHLLLAACPFRTVSSFFSNK 509 57899**********************************************************999999...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +Il+ +e++++vHiiD++i+ G+QWp L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef++ +a+++e+++le+L+++ CA00g63410 510 TILNLAEKASTVHIIDIGIMWGFQWPGLIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAESFKVPFEFHA-IAQKWETIKLEDLKIS 607 ****************************************************9*****************************.7*************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +gEal+Vn+ ++ +llde+v ++s+rd +L+l+++l+P+v++ + +n++ F+ rf eal +ys+lfd+lea++pre +er+ vE+ +lg+e++n CA00g63410 608 KGEALVVNCLFRFRNLLDETVVVNSPRDVFLNLLRRLNPDVFIQGIVNGAYNAPFFVSRFREALFHYSSLFDMLEATIPREMHERMLVEKNILGQEAMN 706 *************************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+acegaer+er et+++W+ r+++aGF+++pl+++++ + + ++++ ++++ +s++l++gWk+r v++S W+ CA00g63410 707 VIACEGAERIERPETYKQWQIRIMKAGFRQLPLDQEIMRLITEGFKVYDKN-FMIDVDSEWLLQGWKGRFGVALSTWK 783 ***************************************999999999855.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.169 | 387 | 764 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.0E-114 | 414 | 783 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 787 aa Download sequence Send to blast |
MELYEAESAI KLEDEACSFL PDPNLINNLR VSDNLVNRSV DISPFQSDIG PNTLVPSTAD 60 DFHEDYDFGD GALKYINQML MEEDIEEKTC MFQESAALQA AERSFYEVIG EKYPSSANHE 120 KPSSLGQNEP YAVDLSGFKY SGNDGLPCPN WILDLGEDDV SHVSHVPDGV ALHSTSRSSY 180 SPSGTVTDVL VDSPVSTLGI ADIFSDREPI MKFKKGVEET SKLLGVALRS TSVSSHSLSG 240 TATDLPVDSP VSTIRIPDIF SDGESIMQFK KGVEEASKFL PTGNSLLADV RYNVVGKEQY 300 EERKDAVVKF EKYGEKQSPE RSRGKKNTLH EDIVDSTEGR SNKQSAVFSE PTVRSEMFDR 360 VLLCSAGKNE SALRETLQAI SRQNALENGL SKGSNGKKFQ GKKKGRKRDV VDLSTLLTLC 420 AQAVAAGNQR TANELLKQIR QSSCPMGDGM QRLAHYFADG LEARMAGSGT HIYKVLIARP 480 VSAADILKAY HLLLAACPFR TVSSFFSNKT ILNLAEKAST VHIIDIGIMW GFQWPGLIQR 540 LSSRPGGPPK LRITGIDFPN PGFRPAERVE ETGRRLANYA ESFKVPFEFH AIAQKWETIK 600 LEDLKISKGE ALVVNCLFRF RNLLDETVVV NSPRDVFLNL LRRLNPDVFI QGIVNGAYNA 660 PFFVSRFREA LFHYSSLFDM LEATIPREMH ERMLVEKNIL GQEAMNVIAC EGAERIERPE 720 TYKQWQIRIM KAGFRQLPLD QEIMRLITEG FKVYDKNFMI DVDSEWLLQG WKGRFGVALS 780 TWKAAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-54 | 420 | 782 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-54 | 420 | 782 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016573543.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
Refseq | XP_016573546.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
TrEMBL | A0A1U8GQL6 | 0.0 | A0A1U8GQL6_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2ZJK8 | 0.0 | A0A2G2ZJK8_CAPAN; scarecrow-like protein 30 | ||||
STRING | PGSC0003DMT400069949 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |