PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g61780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 353aa    MW: 39602.1 Da    PI: 6.5114
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g61780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+d++k +G g W+  +++ g++R++k+c++rw++yl
       CA00g61780 14 KGAWTPIEDKILIDYIKVHGEGKWRNLPNRAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.74.2e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
       CA00g61780  67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.65961IPR017930Myb domain
SuperFamilySSF466893.05E-2812108IPR009057Homeodomain-like
SMARTSM007173.4E-131363IPR001005SANT/Myb domain
PfamPF002494.5E-141461IPR001005SANT/Myb domain
CDDcd001673.12E-101661No hitNo description
PROSITE profilePS5129424.91462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2465116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
CDDcd001672.19E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRKPCCSKE GLNKGAWTPI EDKILIDYIK VHGEGKWRNL PNRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIERKLQEAK  120
GSGQPNRVTS SYRQRNRSSH AKSANPSPIT QLQQNNQEQT IQQDSNCLLQ TDVGREGSSS  180
SSSTCLVVCN KAIRCTKIFI SPQNTDQSVN EITQIDNNDK AMTEENATTN IVTSSSSSLS  240
EQQQQPVSES YSPTNLSVEM ENYNFNFMFG LDVDDPFLSE LLSVPDLRDQ ILENSTISST  300
VDAGDEVGDC NISVKKERQR SYFPPSSSQI SIFSEGTQHN DLELWINGFS SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-85HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549644.10.0PREDICTED: myb-related protein 308-like
SwissprotP102905e-62MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A1U8F0G30.0A0A1U8F0G3_CAPAN; Anthocyanin regulatory C1 protein
TrEMBLA0A2G2Y9560.0A0A2G2Y956_CAPAN; myb-related protein 308-like
STRINGSolyc12g049300.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-62myb domain protein 3
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]