PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g60410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 72aa MW: 7859.26 Da PI: 9.0503 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.5 | 8.5e-09 | 2 | 34 | 13 | 45 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgk 45 fsk ++ + K A LSvLC+++ ++ifs tg+ CA00g60410 2 FSKMQKALCKQATNLSVLCGMKFTILIFSITGE 34 99****************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.792 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.88E-11 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-8 | 2 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MFSKMQKALC KQATNLSVLC GMKFTILIFS ITGEPFIFGK SDAESVVDRF LQAKKATECS 60 SSCRTTVEKN L* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571385.1 | 9e-31 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2G2XY71 | 1e-37 | A0A2G2XY71_CAPAN; Uncharacterized protein | ||||
STRING | XP_009802970.1 | 6e-16 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-10 | AGAMOUS-like 29 |