PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g59350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 174aa MW: 19990.8 Da PI: 9.6556 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W+ ++ g+ R++k+c++rw +yl CA00g59350 14 KGSWSKQEDQKLIDYITKHGEGCWRDLPKAAGLLRCGKSCRLRWMNYL 61 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l CA00g59350 67 RGNFSEDEDDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.254 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.75E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.42E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.22 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-28 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.36E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MRKPGCDNKE EMHKGSWSKQ EDQKLIDYIT KHGEGCWRDL PKAAGLLRCG KSCRLRWMNY 60 LNPNLKRGNF SEDEDDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HLRRKLIKMG 120 IDPKNHNISH YLRIKRLEYF QENGIKSENN AVISDATSSN CVTSSLPDLN SLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-33 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF985023 | 1e-123 | KF985023.1 Petunia x hybrida cultivar Mitchell R2R3-MYB anthocyanin repressor (MYB27) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553378.1 | 1e-125 | PREDICTED: transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 2e-67 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A2G2VKH0 | 1e-124 | A0A2G2VKH0_CAPBA; Transcription repressor MYB4 | ||||
STRING | PGSC0003DMT400078477 | 1e-108 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 7e-70 | myb domain protein 3 |