PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g57880
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 322aa    MW: 34136.1 Da    PI: 10.2086
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g57880genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.2e-38259562
      zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                alkcprCdstntkfCy+nnyslsqPr+fCkaC+ryWt+GGalrnvPvGgg+r+nk+ss
  CA00g57880  2 ALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACKRYWTRGGALRNVPVGGGCRRNKRSS 59
                589****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-24152IPR003851Zinc finger, Dof-type
PfamPF027017.7E-33257IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.562357IPR003851Zinc finger, Dof-type
PROSITE patternPS013610541IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
AALKCPRCDS TNTKFCYFNN YSLSQPRHFC KACKRYWTRG GALRNVPVGG GCRRNKRSSN  60
SKSGNNNNNN NNSKSPASST STDGRQATNN SGSTSTISSH SNSFTGPTSA ASLLGLMTPQ  120
IPPLRFMSPL GQFSSDHHHH HHHFTPSNHM NLNFSTSTCG NILGGXNSMR QLVSRFGNAS  180
GVGAGAGAGV GGVASLLSSG NLEHWRMPQQ FPNFLGGFDP SNSPSSGVSN YPFQGGVHEA  240
VQFLGGESTS QISRPKISTS MLNQMASVKM EDSNNNNNNQ DQSALSRQLL GIQGNNENWN  300
TASAWSDLSA SFSSSSTSNA L*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-121HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542612.11e-166PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A2G3BK091e-166A0A2G3BK09_CAPCH; Dof zinc finger protein DOF3.6
STRINGSolyc09g010680.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.21e-31Dof family protein