PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g53720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 690aa    MW: 74023.2 Da    PI: 8.0853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g53720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.2e-16458504455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  CA00g53720 458 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 504
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-20451512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-20451515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-17457508No hitNo description
PfamPF000102.3E-13458504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MPLSEFLKMA RGKLESAQQK ISSTTNLSSF PEDDLVELKW QNGQIVMQGQ SSSAKKSPVR  60
NDLSLSATGD RDKYTGNSST SKIGKFGLVD SMLDDMPLSV PTGELDLIQE DEEVPWLGYS  120
ADDSLQQDYC SQLLPEISDV TANEQPRQSL FGLMNKRGSS DKMIGDSHSV PVHNAVNFEQ  180
RNTSKVSPSS RFSLLSSLAS PKGQTPLPNL ESGASDIFNR KNSNTPISVL RDSSQSQVSA  240
GDVKNNKIQK QKMPGNRSNL LNFSHFSRPA AKLQNITGGS NVPGSSILEA KGKKDGEKGT  300
IGDNRVSAAA AENYSTSKKE NVFHHPTNAV VSSQLESKAS GANFHVRSCG VEQSDNVFRE  360
CSSNNDDTRG QFTGAKATKD IADGERNVEH GVACSSVCSG SSAERGSSEQ PLNLKRKTRD  420
NEESECRSED VEEESVGIKK TSAARGGTGS KRSRAAEVHN LSERRRRDRI NEKMRALQEL  480
IPNCNKADKA SMLDEAIEYL KTLQLQVQIM SMGAGFCVPP MMFPTGVQHM HAAQMPHFSP  540
MGLGMGMGMG MGMGFGMGML EMNGRSSGCP IFPMPSVQGG HLPSPPIPAS TAYPGMAVSN  600
RHAFAHPAQG LPMSIPRASL GPLAGQSSTG AAVPLNVVRP GIPGEIQSAP PILDSKNPVH  660
KNSQIVHNAE PSRPIHQTCS QVCVLIKYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1462467ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538866.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_016538867.10.0PREDICTED: transcription factor PIF3-like
TrEMBLA0A2G2XYJ30.0A0A2G2XYJ3_CAPAN; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000470790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-41phytochrome interacting factor 3